Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00707 ATGTATCTTTCAAAAGGTTACAAGCATGAAGTTGTTTTCATTTTATGGTTTTGCTGCTATTTGGCACTTGTTGCTGCACAGGATAATATCACTGACCCTATTGAAGTTGAAGCATTAAAAGCCATAAAAAAAATGTTGGTTGATCCTAATAGAAATTTGAGCAATTGGAATCGCGGAGACCCATGTACATCTCGTTGGACAGGAGTTTTGTGTTTCAATGAAACATTATTCGATGGCTATTTACATGTTCAAGAATTGCAACTGATGAATTTGAGCTTGTCTGGAAATTTGGCACCAGAAATTGGCAGCTTACTTTATATGGAAAGATTGAACTTCATGTGGAACAAAATAACTGGGAGTATTCCAAAGGAAATTGGCAATATCAAATCTTTATTCCTCTTACTTCTGAATGGAAATCAATTAACAGGTTCACTACCAGATGAGCTTGGCTTTCTTCCAAACCTAGATAGGATACAAATTGATCAGAACAATATATCAGGACCTCTACCTAAATCATTTGCAAACCTGAACAAGACAAAGCACTTTCACATGAACAATAATTCAATTAGCGGCCAAATCCCACCGGAACTCTACAGACTACCAAAACTCGTTCACTTCCTTCTTGATAACAACAAATTATCTGGATATCTTCCTCCTGAGCTATCGAGACTGCCGAACTTACTTATACTGCAACTTGACAACAATAACTTTGAAGGAAATACCATTCCAGATACTTATAGCAACATGACAAAATTGTTAAAGCTGAGCCTTAAGAATTGCAACTTGCGAGGACCAATTCCTGATTTAAGCCGGATACCACACCTTCTTTATCTTGACCTCAGTTTCAATCAGTTGAATGAATCAATTCCTTCCAAACTTTCAGAGAACATCACAACCATTGATTTATCAAACAATGAGCTTACTGGAACCATTCCATCCTCCTTTTCTAGTCTTTCACGTCTTCAGAGATTGTCTCTTGCAAACAATTCATTGATTGGCAGTGTTTCTTCCACGATTTGGCAGGACAAGACTGTAAATGGAACAGAAAAGTTTATTTTGGAGTTGGAAAATAATCGATTTACAACTGTATCAGGCAATATCGATCTTCCAACAAATGTCACAGTCTTGCTTCATGGGAATCCTGTATGCTCAAATAATAACAGCCTGATTCAGCTCTGTAATTCTGAAGGTGTTAATGACACAAGTGACCTTGTTCCAACAAACGGCATTGGCGTCTGTCCTGCTCAATCATGCCCACCACCTTATGAGTTCTCTTTGGATTGTTTCTGTGCAGCCCCATTGCTTGTTCGTTATCGACTAAAAAGTCCCGGGTTTTCGGATTTCATTCCATACATAAATGATTTTGAGGAATACCTGACTGCTGGTCTTAGTATAAATACAAGTCAGCTAAACTTTACTTTTCAATGGGAAGCAGGACCTCGGCTCAGAATGAACTTGAAGTTCTTTCCTGTATATTTTGGTCCAAATAGTTCTCATATTTTCAATGAAACTGAGGTCCAACGAATTAAAAGCATGTTCACTGGATGGAATATTCCCGACAGTGATTTGTTTGGGCCATATGAATTGTTGAACTTCAATCTAGGTTTTTACCAGAATGTGACTACCACCTCTTCAAAATCAGGGATAAGTACAGGAGCGATAGTTGGCATAGTCTTAGGGGCAATTGCATGTGCAGTGACGTTATCTGCGATTGTTACTCTTCTTATATTAAGAACAAAATTGAAAGATTATCGCGCAGTTTCCAAACGGCGTCGTGTGTCTAAAAGCTCAATAAAAATGGATGGCGTAAGGTCTTTCACTTATGAAGAAATGTCCTCTGCTACGAACCATTTTAGTAGCTCTGCTCAAGTTGGACAGGGAGGCTATGGGAAAGTATATAAAGGTATTCTTCCTGATGGCACTGCTGTTGCTATAAAACGTGCACAGGAGGGATCACTGCAAGGCGAAAAGGAGTTCCTTACAGAAATATCATTACTATCAAGGTTGCATCATCGCAACCTTGTGTCTTTGATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATATATGCCAAACGGAACACTGAGGGATCACCTTTCTGTTACGGCAAAAGAACCTCTGACTTTTATCATGAGATTGAAGATTGCATTAGGGTCAGCTAAAGGTCTCATGTATCTACACAATGAAGCTGATCCTCCAATATTTCATCGAGATGTCAAGGCCAGCAACATATTATTGGACTCTAAGCTCTCTGCAAAAGTGGCTGATTTCGGACTTTCCCGGCTTGCACCAGTTCCAGATATGGAAGGAATTGTGCCTGGTCATGTATCTACTGTGGTAAAGGGGACGCCGGGTTACCTTGATCCAGAGTACTTCTTAACTCACAAGTTGACCGACAAGAGTGATGTTTACAGTCTTGGTGTTGTGTTTCTTGAAATTTTGACCGGAATGCATCCTATCTCACATGGAAAAAATATTGTTAGAGAGGTCAATCTTTCATACCAATCGGGCGTAATTTTTTCAATCATCGATCCACAAATGGGATCATATCCATCTGAACATGTGGAGAAATTTTTGACATTGGCCCTCAAGTGTTGTAATGACGAGCCAGATAATCGGCCTAAAATGGCAGAAGTGGTTAGAGAGCTCGAAAACATATGGAATGTGATGCCGGAATCAGATACAAGGAGAGCTGAATCTATAAACAGTGTCAGTGATTCAAGCAAAGCAATGAGTACACCATCTTCATCATCTGCTATAAGGACTCCTTTTGTATCAGGTGATGTATCAGGTAGTGACCTTGTTAGTGGAGTGATACCAAGCATCAAGCCAAGATAG 2850 0.3944 MYLSKGYKHEVVFILWFCCYLALVAAQDNITDPIEVEALKAIKKMLVDPNRNLSNWNRGDPCTSRWTGVLCFNETLFDGYLHVQELQLMNLSLSGNLAPEIGSLLYMERLNFMWNKITGSIPKEIGNIKSLFLLLLNGNQLTGSLPDELGFLPNLDRIQIDQNNISGPLPKSFANLNKTKHFHMNNNSISGQIPPELYRLPKLVHFLLDNNKLSGYLPPELSRLPNLLILQLDNNNFEGNTIPDTYSNMTKLLKLSLKNCNLRGPIPDLSRIPHLLYLDLSFNQLNESIPSKLSENITTIDLSNNELTGTIPSSFSSLSRLQRLSLANNSLIGSVSSTIWQDKTVNGTEKFILELENNRFTTVSGNIDLPTNVTVLLHGNPVCSNNNSLIQLCNSEGVNDTSDLVPTNGIGVCPAQSCPPPYEFSLDCFCAAPLLVRYRLKSPGFSDFIPYINDFEEYLTAGLSINTSQLNFTFQWEAGPRLRMNLKFFPVYFGPNSSHIFNETEVQRIKSMFTGWNIPDSDLFGPYELLNFNLGFYQNVTTTSSKSGISTGAIVGIVLGAIACAVTLSAIVTLLILRTKLKDYRAVSKRRRVSKSSIKMDGVRSFTYEEMSSATNHFSSSAQVGQGGYGKVYKGILPDGTAVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSVTAKEPLTFIMRLKIALGSAKGLMYLHNEADPPIFHRDVKASNILLDSKLSAKVADFGLSRLAPVPDMEGIVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLEILTGMHPISHGKNIVREVNLSYQSGVIFSIIDPQMGSYPSEHVEKFLTLALKCCNDEPDNRPKMAEVVRELENIWNVMPESDTRRAESINSVSDSSKAMSTPSSSSAIRTPFVSGDVSGSDLVSGVIPSIKPR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00707 949 SMART serkin_6 618 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00707 949 Gene3D Ribonuclease Inhibitor 33 197 IPR032675 -
Trre6g00707 949 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Trre6g00707 949 MobiDBLite consensus disorder prediction 901 928 - -
Trre6g00707 949 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 694 904 - -
Trre6g00707 949 Gene3D Ribonuclease Inhibitor 269 407 IPR032675 -
Trre6g00707 949 FunFam Leucine-rich repeat protein kinase family protein 582 693 - -
Trre6g00707 949 Gene3D Phosphorylase Kinase; domain 1 588 693 - -
Trre6g00707 949 PANTHER RECEPTOR-LIKE PROTEIN 55 42 890 - -
Trre6g00707 949 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Trre6g00707 949 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Trre6g00707 949 SUPERFAMILY Protein kinase-like (PK-like) 603 911 IPR011009 -
Trre6g00707 949 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 194 - -
Trre6g00707 949 Gene3D Ribonuclease Inhibitor 202 268 IPR032675 -
Trre6g00707 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Trre6g00707 949 Gene3D Transferase(Phosphotransferase) domain 1 694 915 - -
Trre6g00707 949 SUPERFAMILY L domain-like 45 394 - -
Trre6g00707 949 CDD STKc_IRAK 624 890 - -
Trre6g00707 949 Pfam Protein kinase domain 620 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00707 949 ProSiteProfiles Protein kinase domain profile. 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00707 949 SMART LRR_typ_2 272 296 IPR003591 -
Trre6g00707 949 SMART LRR_typ_2 200 224 IPR003591 -
Trre6g00707 949 SMART LRR_typ_2 152 175 IPR003591 -
Trre6g00707 949 SMART LRR_typ_2 318 342 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00707 Trre-Chr6 5536352 5544275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00707 18 900 Receptor kinase-like Gene Family AT5G01950 58.509 0.0 987
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trre6g00707 Pkinase 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00707 - - gmx:100786467 1446.41