Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00663 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACAACATGAAGGAGGAGGAGGTGGAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGTGCGGGGCCCTTAGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTATCTGCCACAACTAACCGAGAAATTGATGGGCACATACCAAATTACCCTAGCTTGCCACCTCAGTTGGTTTGCCAACTTCACAATGTCACAATGCATGCAGATGTTGAAACGGATGAAGTATATGCTCAAATGACACTACAGCCGTTGACTCCGGAAGAGCAGAAGGACACATTTCTTCCTATGGAATTGGGCCTTCCAAGTAAGCAGCCATCGAACTATTTTTGCAAGACTTTAACAGCCAGTGACACTAGCACACATGGAGGATTCTCTGTTCCTCGCCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCACAGCAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCATGACGTTGAATGGAAGTTTCGTCATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTTGCCGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTCCTTTTGGGAATACGTCGAGCCAATCGACCACAAACTGTGATGCCATCATCAGTTCTGTCCAGTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACTGTCTTCTATAATCCAAGGGCTAGTCCATCCGAGTTTGTCATACCACTTTCGAAATATATCAAAGCTGTGTACCATACACGTATCTCTGTTGGTATGCGCTTCAGGATGCTTTTCGAGACTGAAGAGTCAAGTGTCCGTAGGTACATGGGTACAATAACTGGCATAAGTGATCTGGATGCTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGGGTATCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCGTTGTTTCCCCTCAGATTGAAACGCCCGTGGCATCCTGGCACCTCATCTTTACTTGATGGCAGAGATGAAGCAGCAAATGGTCTAATGTGGATGAGAGGTGGACCTGCAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGTGCCTCTGGTTTGTTGCCCTGGATGCAGCAGAGACTAGATCCGACTTTACTCGGAAGCGATCAGAATCAACAATACCAAGCTATGTTGGCAGGTGGATTGCAGAACATGGGTAGTGGTGGATATCTCATGAGGCCACAAATGATGAATTTTCAACAACAGCCTATCAATTACCTTCAATCAGGAAACAATAACTCGCCTTTGCAACTTCAGCAGCCTCAAATAATTCAACAAACAGTTAATATGATGCCGCAGCCACAAGCCCAAGTACTTACAGAAAACCTGTCTCAGCTCCTTCAGAAACCAAATAACAATCAAGAAGTGCAAGCTCAACAGCAGCAACATAGTTATCAAGATACACTTCTAATTCAAAATGATCAGCTCCATCAAAGACAACAATCGAACGTGCCGTCACCATCATATTCAAAACCAGATTTCCTTGAGTCAAACATGAAGTTCCCTGCTTCAGTTCCGTCCGGACAAAACATGCTTGGTTCGCTTTGCCCCGAAGGAACTGGTAATCTCTTGAATCTATCGACTCTATCCAGAAGTGGTCAGTCGTTGATGACTGAACAGTTACCACAACAATCATGGACTCCAAAGTATGGAAATATGCAAGTCAATGCGTTTGGCGGCTCAATGTCGCATGCACAATATTCTGGAAAAGAATCCGGGATGGTGTCCTCACATTGTGATTCGGATGCCCAAAATCATACTCTCTCGGGTGTCAATATTGATTCATCTGGCCTTCTACTCCCCACCACTGTCCCTGGTTACACTACTTCATCAGCTGACACTAGTGCATCAACAATGCCATTAGGGGAGTCAGGATTCCAGGGTTCTCTATACGCCTGCATTCAAGATTCATCGTCATTTTTGCAAAATGCAGAGCAAAACGACCCACAAAACCAGAACCCAACATTTGTGAAGGTTTACAAATCGGGATCGGTTGGGCGTTCACTTGACATCTCTCGGTTCAACAGCTATCGTGAGCTGCGAGAGGAGTTGGGTCAGATGTTTGGAATTGAGGGAAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTCGACCGGGAGAATGATGTGCTTCTCCTTGGCGACGATCCGTGGGAATCATTCGTGAATAACGTTTGGTATATCAAAATACTTTCACTGGAAGATATTCAGAAGATGGGAGAACAAGCGGTAGAAACGCTTGCACTAGGTTCAGGACAAAGGCTTAACGGCACTGGTGAATCTCACCACATTGTTTCTGGACAACCACCATCAATTGGCTCACTTGAATACTGA 2559 0.4576 MKLSTSGLGQQGQHEGGGGGGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGHIPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLTPEEQKDTFLPMELGLPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLLDGRDEAANGLMWMRGGPADQGLNSLNFQGASGLLPWMQQRLDPTLLGSDQNQQYQAMLAGGLQNMGSGGYLMRPQMMNFQQQPINYLQSGNNNSPLQLQQPQIIQQTVNMMPQPQAQVLTENLSQLLQKPNNNQEVQAQQQQHSYQDTLLIQNDQLHQRQQSNVPSPSYSKPDFLESNMKFPASVPSGQNMLGSLCPEGTGNLLNLSTLSRSGQSLMTEQLPQQSWTPKYGNMQVNAFGGSMSHAQYSGKESGMVSSHCDSDAQNHTLSGVNIDSSGLLLPTTVPGYTTSSADTSASTMPLGESGFQGSLYACIQDSSSFLQNAEQNDPQNQNPTFVKVYKSGSVGRSLDISRFNSYRELREELGQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSLEDIQKMGEQAVETLALGSGQRLNGTGESHHIVSGQPPSIGSLEY 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00663 852 CDD B3_DNA 133 234 IPR003340 GO:0003677
Trre6g00663 852 Pfam AUX/IAA family 715 810 IPR033389 -
Trre6g00663 852 MobiDBLite consensus disorder prediction 833 852 - -
Trre6g00663 852 Gene3D - 132 235 IPR015300 -
Trre6g00663 852 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 815 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre6g00663 852 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Trre6g00663 852 ProSiteProfiles PB1 domain profile. 726 810 IPR000270 GO:0005515
Trre6g00663 852 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Trre6g00663 852 Gene3D - 722 815 - -
Trre6g00663 852 SMART B3_2 134 236 IPR003340 GO:0003677
Trre6g00663 852 FunFam Auxin response factor 721 815 - -
Trre6g00663 852 SUPERFAMILY DNA-binding pseudobarrel domain 118 263 IPR015300 -
Trre6g00663 852 SUPERFAMILY CAD & PB1 domains 724 800 - -
Trre6g00663 852 MobiDBLite consensus disorder prediction 1 23 - -
Trre6g00663 852 FunFam Auxin response factor 298 370 - -
Trre6g00663 852 Pfam Auxin response factor 260 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre6g00663 852 FunFam Auxin response factor 132 236 - -
Trre6g00663 852 Gene3D - 298 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00663 Trre-Chr6 5128895 5135511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00663 104 818 B3 DNA Binding Superfamily AT5G37020 66.712 0.0 888
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre6g00663 AUX_IAA 1.7e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00663 - - gmx:100784373 1436.4