Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00661 ATGCGACGACAACAACTCAACCTCCTAAATCTAATAACAACCTTAATCACCTTATTATGTTCATGGACCTTAACACAAGCTGACCCTCAAACACGTTTAATCAACAAAGGTTGTAGCACATACAACGCAACAAACTTGTCAAATTTCTACCAAAATCTAAACGCAACTTTGTTAGACTTGAAATCACAAGTAGGAAATGAAAATAAGCATTTTGCTACGGCTCAATCAGCTAAAGGAGCAAATCCTGTTTATGCTTTGTTTCAGTGTAGGAATTATCTCTCTAATTCTGATTGTTCTGCTTGTCTCGCCGTTGCCGCTGCACAAATCCGGAATTGCTCCGCTGGTTCCAACGGTGCCCGTGTTATTTATGATGGTTGCTTCCTTAGGTATGAGAGCAATGGATTCTTCGACCAAACAACTCTACCTGGCAACAGTGTACTTTGTGGTACCCAAACAGCAAATGGAGCCACAGCTTTTAATGCAGCTGCACAACAACTACTATTGGATCTACAAACAGCAACACCTAAAATTCCTGGTTACTTTGCAGCTACCAAGACACAAGTTGCTGGAAATGCAATCTATGCTATTGCACAGTGTGCTGAAACAGTTACTGAAAGTGGTTGTTTAGATTGCTTAACAGTTGGATTCACCAACATACAAGGTTGTTTTCCTAATACTGATGGTGAAGCATTTGATGCTGGTTGTTTTATGAGATACTCAGAGAAATCTTTCTTTGCTGATAACCAAACCATTGATATTACACCCTTCTTGAAACAAGGAAGTTCAAGTAACAAGGGAGCAATTATTGGTGGTGTTGTTGGAGGTGTAGCCCTTGTTCTGATCCTCCTTGCACTATTTGTTTGGCTTAGGCTCAAGAAGAAACCTAAGAGATATCCTAGAGGTGACATATTGGGAGCAACTGAGTTGAAAGGTCCGGTTACTTACCGGTATAATGATTTGAAGGCTGCAACAAAAAAATTTAGTGATGAAAATAAATTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGTACTCTAAAAAATGGTAACGTAGTAGCTGTCAAGAAATTGATTTTAGGCCATTCTGGAAAGATGGATGAACAATTTGAAAGTGAAGTGAAGCTTATAAGTAATGTTCATCACAGGAATTTAGTTCGACTTCTCGGATGTTGTAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAACAGCCTTGACAGATTCTTATTTGGTGAAAAGAAGGGTTCCCTCAACTGGATTCAAAGGTATGATATAATTTTAGGCACAGCAAGAGGTTTGGCCTATCTGCATGAAGATTTCCATGTTTGCATCATACATAGGGATATAAAGACCGGCAACATTCTCTTAGATGATGATCTTCAGCCTAAAATTGCTGATTTTGGATTGGCAAGGCTTCTACCAGAAGATCAATCTCATGTTAGCACAAGATTTGCAGGAACATTGGGATACACTGCACCAGAATATGCAATACATGGTCAGTTATCAGTGAAGGCCGATGCCTACAGTTTCGGTGTTGTAGTCCTAGAAATCATAAGTGGCCAAAAGAGCAGTGAGTTGAGGGAAGATGCTGATGGTGAATTTCTTCTTCAAAGGGCATGGAAACTATACGAGGTAGATAGACACTTGGAGTTAGTTGACAAGACATTGAACCCTAGTGACTATGATGCAGAAGAAGTGAAAAAAGTTATCGCAATTGCTTTGCTTTGCACTCAAGCAACAGCTGCTATAAGGCCAACAATGTCTGAAATAGTAGTTCTACTCAAAAGCAAGAACTTTGTAGAGCATATGAAACCAACTATGCCTGTCTTTGTTAACTCTAACTTGAGGCCTCAGAGTCGGACGGACACATCTACCTCGACCGCTTCTTCTACATCTAATGCTACCGTTTCCACTTCTATATTATCAGCTAGATGA 1947 0.398 MRRQQLNLLNLITTLITLLCSWTLTQADPQTRLINKGCSTYNATNLSNFYQNLNATLLDLKSQVGNENKHFATAQSAKGANPVYALFQCRNYLSNSDCSACLAVAAAQIRNCSAGSNGARVIYDGCFLRYESNGFFDQTTLPGNSVLCGTQTANGATAFNAAAQQLLLDLQTATPKIPGYFAATKTQVAGNAIYAIAQCAETVTESGCLDCLTVGFTNIQGCFPNTDGEAFDAGCFMRYSEKSFFADNQTIDITPFLKQGSSSNKGAIIGGVVGGVALVLILLALFVWLRLKKKPKRYPRGDILGATELKGPVTYRYNDLKAATKKFSDENKLGEGGFGDVYKGTLKNGNVVAVKKLILGHSGKMDEQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANNSLDRFLFGEKKGSLNWIQRYDIILGTARGLAYLHEDFHVCIIHRDIKTGNILLDDDLQPKIADFGLARLLPEDQSHVSTRFAGTLGYTAPEYAIHGQLSVKADAYSFGVVVLEIISGQKSSELREDADGEFLLQRAWKLYEVDRHLELVDKTLNPSDYDAEEVKKVIAIALLCTQATAAIRPTMSEIVVLLKSKNFVEHMKPTMPVFVNSNLRPQSRTDTSTSTASSTSNATVSTSILSAR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00661 648 Pfam Salt stress response/antifungal 38 132 IPR002902 -
Trre6g00661 648 Pfam Salt stress response/antifungal 151 241 IPR002902 -
Trre6g00661 648 Gene3D Transferase(Phosphotransferase) domain 1 404 611 - -
Trre6g00661 648 SUPERFAMILY Protein kinase-like (PK-like) 311 620 IPR011009 -
Trre6g00661 648 FunFam Cysteine-rich receptor-like protein kinase 2 30 135 - -
Trre6g00661 648 ProSiteProfiles Gnk2-homologous domain profile. 31 135 IPR002902 -
Trre6g00661 648 ProSitePatterns Protein kinases ATP-binding region signature. 333 356 IPR017441 GO:0005524
Trre6g00661 648 Gene3D - 30 135 IPR038408 -
Trre6g00661 648 Gene3D - 144 244 IPR038408 -
Trre6g00661 648 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 84 636 - -
Trre6g00661 648 MobiDBLite consensus disorder prediction 616 648 - -
Trre6g00661 648 ProSiteProfiles Protein kinase domain profile. 327 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00661 648 ProSiteProfiles Gnk2-homologous domain profile. 141 244 IPR002902 -
Trre6g00661 648 CDD STKc_IRAK 333 599 - -
Trre6g00661 648 SMART serkin_6 327 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00661 648 FunFam Cysteine-rich receptor-like protein kinase 2 143 244 - -
Trre6g00661 648 FunFam Cysteine-rich receptor-like protein kinase 2 292 403 - -
Trre6g00661 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Trre6g00661 648 Pfam Protein tyrosine and serine/threonine kinase 330 597 IPR001245 GO:0004672|GO:0006468
Trre6g00661 648 Gene3D Phosphorylase Kinase; domain 1 302 403 - -
Trre6g00661 648 FunFam Cysteine-rich receptor-like protein kinase 2 404 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00661 Trre-Chr6 5097956 5112152 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00661 1 648 Receptor kinase-like Gene Family AT1G70520 36.747 3.19e-128 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre6g00661 PK_Tyr_Ser-Thr 5.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00661 - - gmx:100813585 955.666