Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00657 ATGATGCTCCAACTAAAGCTAGTGTTCATAACGTTGGTGTGTTGGAACATAGTAATTAAATATGATTGTGTAGTGCTTGGAGATTCACAAACAAGTATACTACTAAACACTGGATGTAGCACATATAACGCATCAAATTTACGTAGCTTCTATGCAAATATCAATGGAACATTTTTAGATTTGAGAAACCAAATTAGCAATCAAAGCAAACACTTTGCCACATCACAACAAGCCATAGGAGAGGTAATAGTATATTCTATGTTTCAATGTAGAAATTACCTCTCCAGACTTGATTGTGTTGGTTGCTTCAATACTGCTTCTACTAAAATTCGTAATTGTTCAGCTTCTAATGGTGCTAGAGTCATCTATGATGGGTGTTTCCTTAGGTACGAGAGTGAAAGATTCTACGACCAAACAACTCAACCTGGAAATGGTATATCATGTGGAAACAAAACAGCAAAAGAAGGCACTGCATTTGGAACAATTGGACAAAAAGTACTAATGGATCTCCAATCAGCAACACCAAAAATTAAAGGTTTTTTTGCAGCTACTAAGACACAAGTTACTCCTGGTAGTAACAGTTCAATTTATGCCGTTGCACAGTGTGTTGAAACTGCCACAGAAAGTAGTTGTTTAGATTGCATGACAGTTGGATACAACAACTTGCAAACTTGTCTTCCTAATACAGATGGTAGAGCTTATGATGCAGGGTGTTTTATGAGATACTCAGAGACACCCTTTTTTGCTGATAATCAGACCATTGATATCACAACTTATTTAAATAAAGGAGGCTCAAGCAACAAATGGGCCATTATAGGTGGTGTTGTTGGAGGTGTAGGACTTGTGGTGATCATTCTTGTAATTTTAGCTTGGCGCCAATACAAAAAACCTAAGAGGGCTCCTAGAGGTAACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAGTGATTTGAAAGCTGCAACAAAAAACTTTAGTGATGAAAACAAACTAGGAGAAGGAGGCTTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAATGTTGTAGCAGTCAAGAAACTAGTTTTGGGCAAATCAAGCAAAATAGACAATGATTTTGAAAGTGAAGTGAAGCTTATAAGCAATGTTCATCATAGGAATCTTGTTAGACTTCTTGGCTGTTGCAGTAAAAACCAAGAGAGAATTCTTGTCTATGAATACATGGCAAACAGCAGCCTAGACAAATTCTTATTTGGTGACAAACAAGGTTCACTCAATTGGAGACAAAGGTGTGATATAATTTTAGGCACAGCAAAGGGATTGGCCTATCTACATGAGGAATTCCACATTTCCATTATACATAGAGATATAAAAACTAGCAATATCCTCCTTGATGATAATCTTCACCCCAAAATTGCTGATTTTGGATTGGCACGACTTTTGCCGGGGGACCGATCTCATCTAAGCACAGGATTTGCAGGAACATTGGGATACACAGCACCTGAGTACGCAATTCATGGCCAATTATCAGAAAAAGCTGATACCTACAGCTATGGTATTGTAGTCCTGGAAATCATAAGCGGTCAAAAGAGTACCGAACTAAAGGGTGATGATGATGGTGAATACCTTCTTCAAAAGACATGGAAACTGCATGAGAGAGGCATGCACTTGGAGCTTGTGGACAAGGTCTTAGACCCTAATGACTATGATGGAGAAGAAGTGAAGAAAATGATAGAGATTGCTTTAATGTGTACTCAAGCATCAGCTGGAATGAGACCAACAATGTCTGAAGTAGTAGCCTTACTCCAAACCAAGAGCTTAGTGGAGCACCTGCAACCAACTATGCCTGTGTTTGTAGAAACGAATCTTAGGTCTCGAGAAGGCCACTCTACCTCCACCGGAGGCTCTTCTACATCTAATGCTACTGCATCCATTTCTGTTCTATCGGCTCGATGA 1950 0.3892 MMLQLKLVFITLVCWNIVIKYDCVVLGDSQTSILLNTGCSTYNASNLRSFYANINGTFLDLRNQISNQSKHFATSQQAIGEVIVYSMFQCRNYLSRLDCVGCFNTASTKIRNCSASNGARVIYDGCFLRYESERFYDQTTQPGNGISCGNKTAKEGTAFGTIGQKVLMDLQSATPKIKGFFAATKTQVTPGSNSSIYAVAQCVETATESSCLDCMTVGYNNLQTCLPNTDGRAYDAGCFMRYSETPFFADNQTIDITTYLNKGGSSNKWAIIGGVVGGVGLVVIILVILAWRQYKKPKRAPRGNILGATELKGPVNYKYSDLKAATKNFSDENKLGEGGFGDVYKGTLKNGNVVAVKKLVLGKSSKIDNDFESEVKLISNVHHRNLVRLLGCCSKNQERILVYEYMANSSLDKFLFGDKQGSLNWRQRCDIILGTAKGLAYLHEEFHISIIHRDIKTSNILLDDNLHPKIADFGLARLLPGDRSHLSTGFAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTELKGDDDGEYLLQKTWKLHERGMHLELVDKVLDPNDYDGEEVKKMIEIALMCTQASAGMRPTMSEVVALLQTKSLVEHLQPTMPVFVETNLRSREGHSTSTGGSSTSNATASISVLSAR 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00657 649 Gene3D Phosphorylase Kinase; domain 1 296 405 - -
Trre6g00657 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Trre6g00657 649 FunFam Cysteine-rich receptor-like protein kinase 2 143 247 - -
Trre6g00657 649 FunFam Cysteine-rich receptor-like protein kinase 2 294 405 - -
Trre6g00657 649 FunFam Cysteine-rich receptor-like protein kinase 2 30 135 - -
Trre6g00657 649 MobiDBLite consensus disorder prediction 624 649 - -
Trre6g00657 649 ProSiteProfiles Gnk2-homologous domain profile. 141 247 IPR002902 -
Trre6g00657 649 Pfam Protein kinase domain 330 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00657 649 CDD STKc_IRAK 335 601 - -
Trre6g00657 649 Gene3D - 31 135 IPR038408 -
Trre6g00657 649 Gene3D - 145 247 IPR038408 -
Trre6g00657 649 SUPERFAMILY Protein kinase-like (PK-like) 314 617 IPR011009 -
Trre6g00657 649 Pfam Salt stress response/antifungal 39 132 IPR002902 -
Trre6g00657 649 Pfam Salt stress response/antifungal 148 244 IPR002902 -
Trre6g00657 649 ProSiteProfiles Protein kinase domain profile. 329 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00657 649 ProSiteProfiles Gnk2-homologous domain profile. 32 135 IPR002902 -
Trre6g00657 649 ProSitePatterns Protein kinases ATP-binding region signature. 335 358 IPR017441 GO:0005524
Trre6g00657 649 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 85 636 - -
Trre6g00657 649 SMART serkin_6 329 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00657 649 FunFam Cysteine-rich receptor-like protein kinase 2 406 608 - -
Trre6g00657 649 Gene3D Transferase(Phosphotransferase) domain 1 406 612 - -
Trre6g00657 649 Coils Coil 647 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00657 Trre-Chr6 5051505 5057071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00657 25 649 Receptor kinase-like Gene Family AT1G70520 36.677 1.25e-126 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre6g00657 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00657 - - gmx:100801131 920.228