Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00638 ATGGCGAATCAAGATCAAGATGGATTAACTTGTTTCAGTGTTAGCCCTTCAAACTCAATTGGAAATGGAGTTTCTTTGAATTCTGGATCACATTCTGTTGCACATATTCAACTCAGCGATCATTTATCTTGCGCGAATGACTATGCTCTTAAGATAAGGAAACCATATACTATAACAAAACAGAGAGAAAAATGGACAGATGAAGACCATAAGAAGTTCATAGAAGCCTTAAAGCTGTATGGCCGGGCCTGGCGACGCATTGAAGAACATGTTGGCACAAAGACTGCGGTACAAATTCGAAGTCATGCTCAGAAGTTTTTCTCTAAGGTTCTTCGCGACAAAAGTGAGTATACTACAAAAACTAAGGGCTCGATTGAAATTCCTCCTCCACGACCGAAACGAAAGCCTGTGCATCCTTATCCTAGGAAGCTAGTTGAGACGACCGGTAGTAAAGTAATTTCAATCCCGAAAAAGGCAATGAATCCTATTTCTCTGAAGACATCAGATTTTGATCAAGAAAACCAATCTCCCAAATCAGTAATATCTATACCCGGTTCTGAAAGCCTTGGTTCGTCCGATTCAGATACACCAAATGCAAGTTTATCTCCAATATCATCGATTAGCTGTGTTTGCGCAAGTGTTTTTACATCTGCTGAATTCAAAACACCATCAAAGGAAGAAGCTAGGCTAGATGCGGATTCGGCTTCTGATGAAAAACCTATTATGAAACTTGAGATTCTCACCAATGAAATAGTTTCTGTTAAAGAAAGCATCACCGAAGAATCGTCTCGTCAAACTCTTAAACTTTTTGGGATGACTCTACTTGTAACAGATACTTGCAGAACATCTTCTCCAACAATTGAGGCATGCAAACCAATACCTATTAACATAGATTTTAGCAATGTGGAAGGAAAATTGGAACTTCTAGGGAATAGTTCACTATGTGAAAAATCAGCCATATCAAAGCTAAGAGTAACAGTGAGACATGAAACTTGTGGTAAAGGGTTTGTGCCATATAAAAGGTGCATGTCAAAGAAATAA 1041 0.3871 MANQDQDGLTCFSVSPSNSIGNGVSLNSGSHSVAHIQLSDHLSCANDYALKIRKPYTITKQREKWTDEDHKKFIEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDKSEYTTKTKGSIEIPPPRPKRKPVHPYPRKLVETTGSKVISIPKKAMNPISLKTSDFDQENQSPKSVISIPGSESLGSSDSDTPNASLSPISSISCVCASVFTSAEFKTPSKEEARLDADSASDEKPIMKLEILTNEIVSVKESITEESSRQTLKLFGMTLLVTDTCRTSSPTIEACKPIPINIDFSNVEGKLELLGNSSLCEKSAISKLRVTVRHETCGKGFVPYKRCMSKK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00638 346 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Trre6g00638 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Trre6g00638 346 CDD SANT 64 107 IPR001005 -
Trre6g00638 346 MobiDBLite consensus disorder prediction 167 197 - -
Trre6g00638 346 Gene3D - 64 110 - -
Trre6g00638 346 FunFam protein REVEILLE 6 isoform X1 64 112 - -
Trre6g00638 346 ProSiteProfiles SANT domain profile. 60 111 IPR017884 -
Trre6g00638 346 PANTHER SWI/SNF COMPLEX-RELATED 42 273 - -
Trre6g00638 346 MobiDBLite consensus disorder prediction 118 141 - -
Trre6g00638 346 NCBIfam myb-like DNA-binding domain, SHAQKYF class 60 109 IPR006447 GO:0003677
Trre6g00638 346 SMART sant 61 109 IPR001005 -
Trre6g00638 346 Pfam Myb-like DNA-binding domain 62 105 IPR001005 -
Trre6g00638 346 SUPERFAMILY Homeodomain-like 56 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00638 Trre-Chr6 4902115 4903919 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre6g00638 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00638 - - psat:127084287 478.404