Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00637 ATGTCAATCTCAATTTACATTATTACCCTCCAACTAACTTTTCTATTTTCATCATCTACTACTTCTCATTATTCTTCTCCATCACCACCAGCCACACCATTCTCTGAATCTTCTCCTGAACCTCCCTCCTCCACCGTCTCCGATTGGCTCTCCGCTCACGCCACATACTACTCCGCCACCGATGACACCAGAGACGCAGTAGACGGAGCGTGCGGCTACGGAGACACTCACAGGGACGGTTACGGTATCGCGGCAGCAGCTGCTCTGAGTGAAACTCTGTTCGTTCGTGGTCAGATCTGTGGCGCTTGTTTTGAGCTTCGATGTCTTGAGGAGGATGTTCCTTTTGATCGGCGGTGGTGTGTCTCCGGTAAGTCGATTGTTGTGACTGCTACTAATTTCTGTGCTCCGAATTATGGTTTTGATGCGGAGAGTGAAGGTGGACATTGCAATCCTCCTAAGCAGCATTTTGTTCTTCCGGTTGAAGCTTTTGAGAAGATTGCTATTTGGAAAGGGGGTAACATGCCGGTGAAGTATCGCAGGATAAAGTGCATAAGGGAAGGTCGAATGCGGTTTACAATTACTGGTTCTGGCATCTTCAATTCAGTGCTGATCAGTAATGTGGCTGGCATAGGAGACATTGTTGGTGTCAAAGTTAAAGGTTCAAGAACTGGTTGGATTTCTATGGGTCGGAATTGGGGTCAAAACTGGCATGTAAATGCTTTGCTACAAAACCAACCTCTTTCATTTGAGGTTACTAGTAGTGATGGAGTAACCATTACATCTTACAATGTAGCTCCCAAGAATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAATCTTAG 849 0.4582 MSISIYIITLQLTFLFSSSTTSHYSSPSPPATPFSESSPEPPSSTVSDWLSAHATYYSATDDTRDAVDGACGYGDTHRDGYGIAAAAALSETLFVRGQICGACFELRCLEEDVPFDRRWCVSGKSIVVTATNFCAPNYGFDAESEGGHCNPPKQHFVLPVEAFEKIAIWKGGNMPVKYRRIKCIREGRMRFTITGSGIFNSVLISNVAGIGDIVGVKVKGSRTGWISMGRNWGQNWHVNALLQNQPLSFEVTSSDGVTITSYNVAPKNWTFGQTFEGKQFES 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00637 282 CDD DPBB_EXPA_N 48 183 - -
Trre6g00637 282 Gene3D - 33 183 IPR036908 -
Trre6g00637 282 Gene3D - 189 280 IPR036749 -
Trre6g00637 282 PRINTS Expansin signature 80 94 IPR002963 GO:0009664
Trre6g00637 282 PRINTS Expansin signature 146 163 IPR002963 GO:0009664
Trre6g00637 282 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Trre6g00637 282 PRINTS Expansin signature 234 255 IPR002963 GO:0009664
Trre6g00637 282 PRINTS Expansin signature 263 279 IPR002963 GO:0009664
Trre6g00637 282 PRINTS Expansin signature 187 199 IPR002963 GO:0009664
Trre6g00637 282 PRINTS Expansin signature 163 176 IPR002963 GO:0009664
Trre6g00637 282 Pfam Expansin C-terminal domain 189 266 IPR007117 -
Trre6g00637 282 SMART dpbb_1 86 178 IPR007112 -
Trre6g00637 282 PANTHER EXPANSIN-A15 24 280 IPR002963 GO:0009664
Trre6g00637 282 MobiDBLite consensus disorder prediction 27 46 - -
Trre6g00637 282 SUPERFAMILY PHL pollen allergen 186 277 IPR036749 -
Trre6g00637 282 Pfam Lytic transglycolase 87 178 IPR009009 -
Trre6g00637 282 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 198 277 IPR007117 -
Trre6g00637 282 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 188 IPR007112 -
Trre6g00637 282 SUPERFAMILY Barwin-like endoglucanases 44 206 IPR036908 -
Trre6g00637 282 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Trre6g00637 282 PRINTS Expansin/Lol pI family signature 171 187 IPR007118 GO:0005576
Trre6g00637 282 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Trre6g00637 282 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Trre6g00637 282 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Trre6g00637 282 PRINTS Expansin/Lol pI family signature 263 277 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00637 Trre-Chr6 4897963 4900607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00637 48 282 Expansin Gene Family AT3G03220 71.489 1.64e-123 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00637 - - tpra:123916217 507.294