Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00635 ATGGAAGAACAACATCAAGAAGTTTCCTTGCCAGGAACAGTTCCTTTTGATAGAGCTCTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTCAAGTGTGGTAGTCGAGGAAAGCCGAAGCTCTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATCTGGTGCTCAGGACAGCAGGAAAAACATTTGCGGTTGAGCGGAGTTACAAAAATTGTTCAAGGACAAGGAAATATAAAGTCTCAGAGACAAAACGAAACCGAAAAGGAATGCCATTCATTTTCACTGATCTATGCGAATGGTGAACACACTCTTGATCTGATATGCAAGGATAAAGCACAAGCTGCTACTTGGTTTGTTGGCTTAAAAGCTGTGATTTCAAGGTGTCAGCAACCTAAAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGTGTGCAGAGTTGTGTTAGTAGTCCCGCTGGAATTTTACGCCGAAAGAAAAATCTTGGTCTTTTAGATGATACCTCTCAATTTACTCAGGTACATAGCGTATGTGCAAGTCCAACTCTGTCACTTCAAGAAAGGTGTTTTTCTGATGGCATGTCGTATACATCTGATAACCTTTATTCATCGGCATCATCCCTTTCCAGCACTCAATGCAGAACAGATAGTTCAGTCCCAAGTTCTCCATATATTAATCCAGCTATTCATAGCAATATTAATACATCTCGTTTCGAAAAGGAGTACAAGAAGGATTTGTGGTCATATAGATCTATCATTTCTCCTACTACCTCCTCACATGTAGGAAATAGCAATAACAATGTATTAAAGGATGTAATGATATGGGGTGGTGGAATTGGTTGCCTAGTAGGGATTGTGAATGAAAGGTTTGTCCAAAATAGTATTTATTCTTTAGTACCAAAGTTACTCGAATCGACCGCGATGTTAGATGTACAAAATATAGCTTTAGGAGGAAACCATGCTGCAATAGCTACAAAACAAGGCGAAGTTTATTGTTGGGGTCAAGGGAAGAGGGGAAGGTTAGGGCAAAAAATTGATATGGACATTAGCTCCCCCAAAATAGTTGATTCTCTTAGTGATATTCGTGTAAAAAACGTTGTCTGTGGCGAGTATCACACATGTGCTTTGACGGATTCGGGTGAAGTATATGCGTGGGGGAACGACGTTTCTTGTTCGGAATCGGTTGATGAAGGGAGATTTAGGAGTCAGTGGTTAACACATAAACTTTCTTTACCTGTAGAGGGCATTAGTATTTCAAGTGTTGCTTGTGGAGAATGGCATACCGCAATTGTTTCCAGCTGCGGTCGGTTATTTACATACGGAGATGGTACATTTGGAGTGCTTGGACATGGGAATTATCATAGCTTTTCTAGTCCAAAAGAAGTTGAGTCTCTTAAGGGTTTATGTGTGAGGTCTGTTGCTTGTGGAACATGGCATACAGCCGCAATTATCGAAGTCATCGCTGACCGTTTTAAGTACAATACTTCTACCGGTAAGCTGTTTACATGGGGTGATGGAGATGAAGCGAGGCTTGGTCATGCCGATAATGGAAACAAGCTTGTACCAACATGTGTTTCACAGCTTGTCGACTACGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTCTAGCACTTACTAATATGGGGAAAGTTTTTGCTATTGGAAGTGCAAAATATGGACAATTGGGAAATCCACATGTTAAGGATAGAGCAGTTCTGGTTGAAGGTATGCTTAAACAAGAATATGTGAAAATGATATCTTGTGGTTCATATCATGCTGCTGTTTTGACATCTTCAGGAAGTGTCTACACATGGGGCAAAGGTGAAAATGGACAACTTGGGCTAGGCGATACCGAAAACCGATACACACCATGTTTTGTTGAGGCACTAAGAGATAGGCAGGTAGATACAATAACTTGTGGTCCAAGTTTCACAGTTGCGGTATGTTTGCATAAACCTATTTCAATTAGTGACCAATCAAGTTGTAGTGGTTGTAGGTTAGCATTTGGTTTCACAAGGAAGAAACATAACTGTTATAACTGTGGTCTTTTGTTCTGTCGTGCTTGTAGTAGTAAAAAGGTCACCGATGCGTCTCTAGCCCCGGATAAGAACAAGGCCTTTCGTGTTTGTGATTCGTGCTTTGATAGAAAGCAAGGAAGTAGTAGTAGTAGTAGTAAACATTCAGTTTTGGAATCGTTTAACTCTAGAAATTGTAACAATCAGCAGATACAAAAGCATCATCAGAATAAAATTGGTGATTTCACCGAAGATAGAGGTGAAACAAATGTGACAAATGGTCCTTTATTGTCTGTTAGTCAATCGTGTTACCGGAAAAGCATGCCTAGTGGAAGGAAGGTTTGGAAAAACCAACAAGAAAGCCAACACGATTTAGAAGACAATTCTTCTAAGTTAGGTAGTGTGCCACAATGTGGACAAGTTCCATGTTCCGCACAATTTGGAATCAATTGTACAGAAAATTCAGTTGTACACGAGACAGATACGTCAAAGTCTGATAAGTTGCTCATAGAAGAAGTTCAAAGGCTGAGAGCTGAGGCTAAGAGACTTGAAAAGCAATGTGAGCTTAAAGACAATGAAATACTAGAGTGTCAACAAAAAGTTCAGGAGAGTTGGTCTGTGGCCAAAGAGGAAGCTGCTAAGTGCAAAGCAGCAAAAGATGTCATAAAAGCTTTGGCATTAAGGCTTCATACATTATCTGGAAAAGATAATCATGGACTAGAACAAAAGTCTGGACTACAAGAATTTCTTCCAAATTTGGCACCAATACAAACAGATATGAATAGTCCAAGAAATGCCAATATGGATAGTTTATCAAATTCTCCTATAATATTCTCTAGTGCATTAAAGTCCAAATTTGGGAGAAGTATCCTTCTCAAAAATGACAAGTTGACGCCGAAGACTATCACTAAAGCAGAAGCTCAACAAAACACTGCAGATGGCTTGAAGACGGTTGAATGGGTAGAACAGTATGAGAATGGTGTTTACATAACATTGACAATCTCGCCGAGTGGAGAAAAAGGAGTTAAGCGTGTGAGATTTAGCCGGAAGCGATTTTCGCAGAAAGAAGCTGAAAAGTGGTGGGAAGAGAATCAAACAAAAGTGTATCATAAGTATGAAATTGAAGGAATTTAA 3159 0.396 MEEQHQEVSLPGTVPFDRALEQAIVSIKKGAYLLKCGSRGKPKLCPFRLSPDERNLIWCSGQQEKHLRLSGVTKIVQGQGNIKSQRQNETEKECHSFSLIYANGEHTLDLICKDKAQAATWFVGLKAVISRCQQPKAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLQERCFSDGMSYTSDNLYSSASSLSSTQCRTDSSVPSSPYINPAIHSNINTSRFEKEYKKDLWSYRSIISPTTSSHVGNSNNNVLKDVMIWGGGIGCLVGIVNERFVQNSIYSLVPKLLESTAMLDVQNIALGGNHAAIATKQGEVYCWGQGKRGRLGQKIDMDISSPKIVDSLSDIRVKNVVCGEYHTCALTDSGEVYAWGNDVSCSESVDEGRFRSQWLTHKLSLPVEGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNYHSFSSPKEVESLKGLCVRSVACGTWHTAAIIEVIADRFKYNTSTGKLFTWGDGDEARLGHADNGNKLVPTCVSQLVDYDFVQVSCGRMLTLALTNMGKVFAIGSAKYGQLGNPHVKDRAVLVEGMLKQEYVKMISCGSYHAAVLTSSGSVYTWGKGENGQLGLGDTENRYTPCFVEALRDRQVDTITCGPSFTVAVCLHKPISISDQSSCSGCRLAFGFTRKKHNCYNCGLLFCRACSSKKVTDASLAPDKNKAFRVCDSCFDRKQGSSSSSSKHSVLESFNSRNCNNQQIQKHHQNKIGDFTEDRGETNVTNGPLLSVSQSCYRKSMPSGRKVWKNQQESQHDLEDNSSKLGSVPQCGQVPCSAQFGINCTENSVVHETDTSKSDKLLIEEVQRLRAEAKRLEKQCELKDNEILECQQKVQESWSVAKEEAAKCKAAKDVIKALALRLHTLSGKDNHGLEQKSGLQEFLPNLAPIQTDMNSPRNANMDSLSNSPIIFSSALKSKFGRSILLKNDKLTPKTITKAEAQQNTADGLKTVEWVEQYENGVYITLTISPSGEKGVKRVRFSRKRFSQKEAEKWWEENQTKVYHKYEIEGI 1052
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00635 1052 Gene3D - 245 392 IPR009091 -
Trre6g00635 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 603 654 IPR000408 -
Trre6g00635 1052 Gene3D - 393 660 IPR009091 -
Trre6g00635 1052 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 475 485 IPR000408 -
Trre6g00635 1052 CDD FYVE_like_SF 664 717 - -
Trre6g00635 1052 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 905 - -
Trre6g00635 1052 SUPERFAMILY FYVE/PHD zinc finger 660 725 IPR011011 -
Trre6g00635 1052 Pfam Transcription factor regulating root and shoot growth via Pin3 994 1047 IPR013591 -
Trre6g00635 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 500 551 IPR000408 -
Trre6g00635 1052 CDD PH_PLC_plant-like 18 130 - -
Trre6g00635 1052 Coils Coil 841 875 - -
Trre6g00635 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 330 378 IPR000408 -
Trre6g00635 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 437 485 IPR000408 -
Trre6g00635 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 500 548 IPR000408 -
Trre6g00635 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 602 651 IPR000408 -
Trre6g00635 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 552 599 IPR000408 -
Trre6g00635 1052 Pfam Pleckstrin homology domain 21 127 IPR001849 -
Trre6g00635 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 381 IPR000408 -
Trre6g00635 1052 SUPERFAMILY PH domain-like 20 129 - -
Trre6g00635 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 382 436 IPR000408 -
Trre6g00635 1052 Gene3D - 19 136 IPR011993 -
Trre6g00635 1052 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 732 IPR013083 -
Trre6g00635 1052 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 659 721 IPR017455 -
Trre6g00635 1052 ProSiteProfiles BRX domain profile. 993 1048 IPR013591 -
Trre6g00635 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 552 602 IPR000408 -
Trre6g00635 1052 PRINTS Chromosome condensation regulator RCC1 signature 382 398 IPR000408 -
Trre6g00635 1052 PRINTS Chromosome condensation regulator RCC1 signature 439 453 IPR000408 -
Trre6g00635 1052 PRINTS Chromosome condensation regulator RCC1 signature 541 559 IPR000408 -
Trre6g00635 1052 PRINTS Chromosome condensation regulator RCC1 signature 332 348 IPR000408 -
Trre6g00635 1052 PRINTS Chromosome condensation regulator RCC1 signature 423 439 IPR000408 -
Trre6g00635 1052 PRINTS Chromosome condensation regulator RCC1 signature 313 326 IPR000408 -
Trre6g00635 1052 PRINTS Chromosome condensation regulator RCC1 signature 598 619 IPR000408 -
Trre6g00635 1052 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 589 599 IPR000408 -
Trre6g00635 1052 SMART fyve_4 653 722 IPR000306 GO:0046872
Trre6g00635 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 437 488 IPR000408 -
Trre6g00635 1052 SUPERFAMILY RCC1/BLIP-II 273 655 IPR009091 -
Trre6g00635 1052 Pfam FYVE zinc finger 661 719 IPR000306 GO:0046872
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre6g00635 Trre-Chr6 4842687 4848440 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00635 988 1050 Major Intrinsic Protein MIP AT1G31880 42.857 1.14e-09 59.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00635 - - gmx:100794953 1589.7