Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre6g00635 | ATGGAAGAACAACATCAAGAAGTTTCCTTGCCAGGAACAGTTCCTTTTGATAGAGCTCTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTCAAGTGTGGTAGTCGAGGAAAGCCGAAGCTCTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATCTGGTGCTCAGGACAGCAGGAAAAACATTTGCGGTTGAGCGGAGTTACAAAAATTGTTCAAGGACAAGGAAATATAAAGTCTCAGAGACAAAACGAAACCGAAAAGGAATGCCATTCATTTTCACTGATCTATGCGAATGGTGAACACACTCTTGATCTGATATGCAAGGATAAAGCACAAGCTGCTACTTGGTTTGTTGGCTTAAAAGCTGTGATTTCAAGGTGTCAGCAACCTAAAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGTGTGCAGAGTTGTGTTAGTAGTCCCGCTGGAATTTTACGCCGAAAGAAAAATCTTGGTCTTTTAGATGATACCTCTCAATTTACTCAGGTACATAGCGTATGTGCAAGTCCAACTCTGTCACTTCAAGAAAGGTGTTTTTCTGATGGCATGTCGTATACATCTGATAACCTTTATTCATCGGCATCATCCCTTTCCAGCACTCAATGCAGAACAGATAGTTCAGTCCCAAGTTCTCCATATATTAATCCAGCTATTCATAGCAATATTAATACATCTCGTTTCGAAAAGGAGTACAAGAAGGATTTGTGGTCATATAGATCTATCATTTCTCCTACTACCTCCTCACATGTAGGAAATAGCAATAACAATGTATTAAAGGATGTAATGATATGGGGTGGTGGAATTGGTTGCCTAGTAGGGATTGTGAATGAAAGGTTTGTCCAAAATAGTATTTATTCTTTAGTACCAAAGTTACTCGAATCGACCGCGATGTTAGATGTACAAAATATAGCTTTAGGAGGAAACCATGCTGCAATAGCTACAAAACAAGGCGAAGTTTATTGTTGGGGTCAAGGGAAGAGGGGAAGGTTAGGGCAAAAAATTGATATGGACATTAGCTCCCCCAAAATAGTTGATTCTCTTAGTGATATTCGTGTAAAAAACGTTGTCTGTGGCGAGTATCACACATGTGCTTTGACGGATTCGGGTGAAGTATATGCGTGGGGGAACGACGTTTCTTGTTCGGAATCGGTTGATGAAGGGAGATTTAGGAGTCAGTGGTTAACACATAAACTTTCTTTACCTGTAGAGGGCATTAGTATTTCAAGTGTTGCTTGTGGAGAATGGCATACCGCAATTGTTTCCAGCTGCGGTCGGTTATTTACATACGGAGATGGTACATTTGGAGTGCTTGGACATGGGAATTATCATAGCTTTTCTAGTCCAAAAGAAGTTGAGTCTCTTAAGGGTTTATGTGTGAGGTCTGTTGCTTGTGGAACATGGCATACAGCCGCAATTATCGAAGTCATCGCTGACCGTTTTAAGTACAATACTTCTACCGGTAAGCTGTTTACATGGGGTGATGGAGATGAAGCGAGGCTTGGTCATGCCGATAATGGAAACAAGCTTGTACCAACATGTGTTTCACAGCTTGTCGACTACGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTCTAGCACTTACTAATATGGGGAAAGTTTTTGCTATTGGAAGTGCAAAATATGGACAATTGGGAAATCCACATGTTAAGGATAGAGCAGTTCTGGTTGAAGGTATGCTTAAACAAGAATATGTGAAAATGATATCTTGTGGTTCATATCATGCTGCTGTTTTGACATCTTCAGGAAGTGTCTACACATGGGGCAAAGGTGAAAATGGACAACTTGGGCTAGGCGATACCGAAAACCGATACACACCATGTTTTGTTGAGGCACTAAGAGATAGGCAGGTAGATACAATAACTTGTGGTCCAAGTTTCACAGTTGCGGTATGTTTGCATAAACCTATTTCAATTAGTGACCAATCAAGTTGTAGTGGTTGTAGGTTAGCATTTGGTTTCACAAGGAAGAAACATAACTGTTATAACTGTGGTCTTTTGTTCTGTCGTGCTTGTAGTAGTAAAAAGGTCACCGATGCGTCTCTAGCCCCGGATAAGAACAAGGCCTTTCGTGTTTGTGATTCGTGCTTTGATAGAAAGCAAGGAAGTAGTAGTAGTAGTAGTAAACATTCAGTTTTGGAATCGTTTAACTCTAGAAATTGTAACAATCAGCAGATACAAAAGCATCATCAGAATAAAATTGGTGATTTCACCGAAGATAGAGGTGAAACAAATGTGACAAATGGTCCTTTATTGTCTGTTAGTCAATCGTGTTACCGGAAAAGCATGCCTAGTGGAAGGAAGGTTTGGAAAAACCAACAAGAAAGCCAACACGATTTAGAAGACAATTCTTCTAAGTTAGGTAGTGTGCCACAATGTGGACAAGTTCCATGTTCCGCACAATTTGGAATCAATTGTACAGAAAATTCAGTTGTACACGAGACAGATACGTCAAAGTCTGATAAGTTGCTCATAGAAGAAGTTCAAAGGCTGAGAGCTGAGGCTAAGAGACTTGAAAAGCAATGTGAGCTTAAAGACAATGAAATACTAGAGTGTCAACAAAAAGTTCAGGAGAGTTGGTCTGTGGCCAAAGAGGAAGCTGCTAAGTGCAAAGCAGCAAAAGATGTCATAAAAGCTTTGGCATTAAGGCTTCATACATTATCTGGAAAAGATAATCATGGACTAGAACAAAAGTCTGGACTACAAGAATTTCTTCCAAATTTGGCACCAATACAAACAGATATGAATAGTCCAAGAAATGCCAATATGGATAGTTTATCAAATTCTCCTATAATATTCTCTAGTGCATTAAAGTCCAAATTTGGGAGAAGTATCCTTCTCAAAAATGACAAGTTGACGCCGAAGACTATCACTAAAGCAGAAGCTCAACAAAACACTGCAGATGGCTTGAAGACGGTTGAATGGGTAGAACAGTATGAGAATGGTGTTTACATAACATTGACAATCTCGCCGAGTGGAGAAAAAGGAGTTAAGCGTGTGAGATTTAGCCGGAAGCGATTTTCGCAGAAAGAAGCTGAAAAGTGGTGGGAAGAGAATCAAACAAAAGTGTATCATAAGTATGAAATTGAAGGAATTTAA | 3159 | 0.396 | MEEQHQEVSLPGTVPFDRALEQAIVSIKKGAYLLKCGSRGKPKLCPFRLSPDERNLIWCSGQQEKHLRLSGVTKIVQGQGNIKSQRQNETEKECHSFSLIYANGEHTLDLICKDKAQAATWFVGLKAVISRCQQPKAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLQERCFSDGMSYTSDNLYSSASSLSSTQCRTDSSVPSSPYINPAIHSNINTSRFEKEYKKDLWSYRSIISPTTSSHVGNSNNNVLKDVMIWGGGIGCLVGIVNERFVQNSIYSLVPKLLESTAMLDVQNIALGGNHAAIATKQGEVYCWGQGKRGRLGQKIDMDISSPKIVDSLSDIRVKNVVCGEYHTCALTDSGEVYAWGNDVSCSESVDEGRFRSQWLTHKLSLPVEGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNYHSFSSPKEVESLKGLCVRSVACGTWHTAAIIEVIADRFKYNTSTGKLFTWGDGDEARLGHADNGNKLVPTCVSQLVDYDFVQVSCGRMLTLALTNMGKVFAIGSAKYGQLGNPHVKDRAVLVEGMLKQEYVKMISCGSYHAAVLTSSGSVYTWGKGENGQLGLGDTENRYTPCFVEALRDRQVDTITCGPSFTVAVCLHKPISISDQSSCSGCRLAFGFTRKKHNCYNCGLLFCRACSSKKVTDASLAPDKNKAFRVCDSCFDRKQGSSSSSSKHSVLESFNSRNCNNQQIQKHHQNKIGDFTEDRGETNVTNGPLLSVSQSCYRKSMPSGRKVWKNQQESQHDLEDNSSKLGSVPQCGQVPCSAQFGINCTENSVVHETDTSKSDKLLIEEVQRLRAEAKRLEKQCELKDNEILECQQKVQESWSVAKEEAAKCKAAKDVIKALALRLHTLSGKDNHGLEQKSGLQEFLPNLAPIQTDMNSPRNANMDSLSNSPIIFSSALKSKFGRSILLKNDKLTPKTITKAEAQQNTADGLKTVEWVEQYENGVYITLTISPSGEKGVKRVRFSRKRFSQKEAEKWWEENQTKVYHKYEIEGI | 1052 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre6g00635 | 1052 | Gene3D | - | 245 | 392 | IPR009091 | - | |
Trre6g00635 | 1052 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 603 | 654 | IPR000408 | - | |
Trre6g00635 | 1052 | Gene3D | - | 393 | 660 | IPR009091 | - | |
Trre6g00635 | 1052 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 475 | 485 | IPR000408 | - | |
Trre6g00635 | 1052 | CDD | FYVE_like_SF | 664 | 717 | - | - | |
Trre6g00635 | 1052 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 64 | 905 | - | - | |
Trre6g00635 | 1052 | SUPERFAMILY | FYVE/PHD zinc finger | 660 | 725 | IPR011011 | - | |
Trre6g00635 | 1052 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 994 | 1047 | IPR013591 | - | |
Trre6g00635 | 1052 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 500 | 551 | IPR000408 | - | |
Trre6g00635 | 1052 | CDD | PH_PLC_plant-like | 18 | 130 | - | - | |
Trre6g00635 | 1052 | Coils | Coil | 841 | 875 | - | - | |
Trre6g00635 | 1052 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 330 | 378 | IPR000408 | - | |
Trre6g00635 | 1052 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 437 | 485 | IPR000408 | - | |
Trre6g00635 | 1052 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 500 | 548 | IPR000408 | - | |
Trre6g00635 | 1052 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 602 | 651 | IPR000408 | - | |
Trre6g00635 | 1052 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 552 | 599 | IPR000408 | - | |
Trre6g00635 | 1052 | Pfam | Pleckstrin homology domain | 21 | 127 | IPR001849 | - | |
Trre6g00635 | 1052 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 330 | 381 | IPR000408 | - | |
Trre6g00635 | 1052 | SUPERFAMILY | PH domain-like | 20 | 129 | - | - | |
Trre6g00635 | 1052 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 382 | 436 | IPR000408 | - | |
Trre6g00635 | 1052 | Gene3D | - | 19 | 136 | IPR011993 | - | |
Trre6g00635 | 1052 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 661 | 732 | IPR013083 | - | |
Trre6g00635 | 1052 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 659 | 721 | IPR017455 | - | |
Trre6g00635 | 1052 | ProSiteProfiles | BRX domain profile. | 993 | 1048 | IPR013591 | - | |
Trre6g00635 | 1052 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 552 | 602 | IPR000408 | - | |
Trre6g00635 | 1052 | PRINTS | Chromosome condensation regulator RCC1 signature | 382 | 398 | IPR000408 | - | |
Trre6g00635 | 1052 | PRINTS | Chromosome condensation regulator RCC1 signature | 439 | 453 | IPR000408 | - | |
Trre6g00635 | 1052 | PRINTS | Chromosome condensation regulator RCC1 signature | 541 | 559 | IPR000408 | - | |
Trre6g00635 | 1052 | PRINTS | Chromosome condensation regulator RCC1 signature | 332 | 348 | IPR000408 | - | |
Trre6g00635 | 1052 | PRINTS | Chromosome condensation regulator RCC1 signature | 423 | 439 | IPR000408 | - | |
Trre6g00635 | 1052 | PRINTS | Chromosome condensation regulator RCC1 signature | 313 | 326 | IPR000408 | - | |
Trre6g00635 | 1052 | PRINTS | Chromosome condensation regulator RCC1 signature | 598 | 619 | IPR000408 | - | |
Trre6g00635 | 1052 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 589 | 599 | IPR000408 | - | |
Trre6g00635 | 1052 | SMART | fyve_4 | 653 | 722 | IPR000306 | GO:0046872 | |
Trre6g00635 | 1052 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 437 | 488 | IPR000408 | - | |
Trre6g00635 | 1052 | SUPERFAMILY | RCC1/BLIP-II | 273 | 655 | IPR009091 | - | |
Trre6g00635 | 1052 | Pfam | FYVE zinc finger | 661 | 719 | IPR000306 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre6g00635 | Trre-Chr6 | 4842687 | 4848440 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre6g00635 | 988 | 1050 | Major Intrinsic Protein MIP | AT1G31880 | 42.857 | 1.14e-09 | 59.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre6g00635 | - | - | gmx:100794953 | 1589.7 |