Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00634 ATGACAATGGAAGAACAACATCAAGAAGTTTCCTTGCCAGGAACAGTTCCTTTTGATAGAGCTCTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTCAAGTGTGGTAGTCGAGGAAAGCCGAAGCTCTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATCTGGTGCTCAGGACAGCAGGAAAAACATTTGCGGTTGAGCGGAGTTACAAAAATTGTTCAAGGACAAGGAAATATAAAGTCTCAGAGACAAAACGAAACCGAAAAGGAATGCCATTCATTTTCACTGATCTATGCGAATGGTGAACACACTCTTGATCTGATATGCAAGGATAAAGCACAAGCTGCTACTTGGTTTGTTGGCTTAAAAGCTGTGATTTCAAGGTGTCAGCAACCTAAAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGTGTGCAGAGTTGTGTTAGTAGTCCCGCTGGAATTTTACGCCGAAAGAAAAATCTTGGTCTTTTAGATGATACCTCTCAATTTACTCAGGTACATAGCGTATGTGCAAGTCCAACTCTGTCACTTCAAGAAAGGTGTTTTTCTGATGGCATGTCGTATACATCTGATAACCTTTATTCATCGGCATCATCCCTTTCCAGCACTCAATGCAGAACAGATAGTTCAGTCCCAAGTTCTCCATATATTAATCCAGCTATTCATAGCAATATTAATACATCTCGTTTCGAAAAGGAGTACAAGAAGGATTTGTGGTCATATAGATCTATCATTTCTCCTACTACCTCCTCACATGTAGGAAATAGCAATAACAATGTATTAAAGGATGTAATGATATGGGGTGGTGGAATTGGTTGCCTAGTAGGGATTGTGAATGAAAGGTTTGTCCAAAATAGTATTTATTCTTTAGTACCAAAGTTACTCGAATCGACCGCGATGTTAGATGTACAAAATATAGCTTTAGGAGGAAACCATGCTGCAATAGCTACAAAACAAGGCGAAGTTTATTGTTGGGGTCAAGGGAAGAGGGGAAGGTTAGGGCAAAAAATTGATATGGACATTAGCTCCCCCAAAATAGTTGATTCTCTTAGTGATATTCGTGTAAAAAACGTTGTCTGTGGCGAGTATCACACATGTGCTTTGACGGATTCGGGTGAAGTATATGCGTGGGGGAACGACGTTTCTTGTTCGGAATCGGTTGATGAAGGGAGATTTAGGAGTCAGTGGTTAACACATAAACTTTCTTTACCTGTAGAGGGCATTAGTATTTCAAGTGTTGCTTGTGGAGAATGGCATACCGCAATTGTTTCCAGCTGCGGTCGGTTATTTACATACGGAGATGGTACATTTGGAGTGCTTGGACATGGGAATTATCATAGCTTTTCTAGTCCAAAAGAAGTTGAGTCTCTTAAGGGTTTATGTGTGAGGTCTGTTGCTTGTGGAACATGGCATACAGCCGCAATTATCGAAGTCATCGCTGACCGTTTTAAGTACAATACTTCTACCGGTAAGCTGTTTACATGGGGTGATGGAGATGAAGCGAGGCTTGGTCATGCCGATAATGGAAACAAGCTTGTACCAACATGTGTTTCACAGCTTGTCGACTACGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTCTAGCACTTACTAATATGGGGAAAGTTTTTGCTATTGGAAGTGCAAAATATGGACAATTGGGAAATCCACATGTTAAGGATAGAGCAGTTCTGGTTGAAGGTATGCTTAAACAAGAATATGTGAAAATGATATCTTGTGGTTCATATCATGCTGCTGTTTTGACATCTTCAGGAAGTGTCTACACATGGGGCAAAGGTGAAAATGGACAACTTGGGCTAGGCGATACCGAAAACCGATACACACCATGTTTTGTTGAGGCACTAAGAGATAGGCAGGTAGATACAATAACTTGTGGTCCAAGTTTCACAGTTGCGGTATGTTTGCATAAACCTATTTCAATTAGTGACCAATCAAGTTGTAGTGGTTGTAGGTTAGCATTTGGTTTCACAAGGAAGAAACATAACTGTTATAACTGTGGTCTTTTGTTCTGTCGTGCTTGTAGTAGTAAAAAGGTCACCGATGCGTCTCTAGCCCCGGATAAGAACAAGGCCTTTCGTGTTTGTGATTCGTGCTTTGATAGAAAGCAAGGAAGTAGTAGTAGTAGTAGTAAACATTCAGTTTTGGAATCGTTTAACTCTAGAAATTGTAACAATCAGCAGATACAAAAGCATCATCAGAATAAAATTGGTGATTTCACCGAAGATAGAGGTGAAACAAATGTGACAAATGGTCCTTTATTGTCTGTTAGTCAATCGTGTTACCGGAAAAGCATGCCTAGTGGAAGGAAGGTTTGGAAAAACCAACAAGAAAGCCAACACGATTTAGAAGACAATTCTTCTAAGTTAGGTAGTGTGCCACAATGTGGACAAGTTCCATGTTCCGCACAATTTGGAATCAATTGTACAGAAAATTCAGTTGTACACGAGACAGATACGTCAAAGTCTGATAAGTTGCTCATAGAAGAAGTTCAAAGGCTGAGAGCTGAGGCTAAGAGACTTGAAAAGCAATGTGAGCTTAAAGACAATGAAATACTAGAGTGTCAACAAAAAGTTCAGGAGAGTTGGTCTGTGGCCAAAGAGGAAGCTGCTAAGTGCAAAGCAGCAAAAGATGTCATAAAAGCTTTGGCATTAAGGCTTCATACATTATCTGGAAAAGATAATCATGGACTAGAACAAAAGTCTGGACTACAAGAATTTCTTCCAAATTTGGCACCAATACAAACAGATATGAATAGTCCAAGAAATGCCAATATGGATAGTTTATCAAATTCTCCTATAATATTCTCTAGTGCATTAAAGTCCAAATTTGGGAGAAGTATCCTTCTCAAAAATGACAAGTTGACGCCGAAGACTATCACTAAAGCAGAAGCTCAACAAAACACTGCAGATGGCTTGAAGACGGTTGAATGGGTAGAACAGTATGAGAATGGTGTTTACATAACATTGACAATCTCGCCGAGTGGAGAAAAAGGAGTTAAGCGTGTGAGATTTAGCCGGAAGCGATTTTCGCAGAAAGAAGCTGAAAAGTGGTGGGAAGAGAATCAAACAAAAGTGTATCATAAGTATGAAATTGAAGGAATTTAA 3165 0.3959 MTMEEQHQEVSLPGTVPFDRALEQAIVSIKKGAYLLKCGSRGKPKLCPFRLSPDERNLIWCSGQQEKHLRLSGVTKIVQGQGNIKSQRQNETEKECHSFSLIYANGEHTLDLICKDKAQAATWFVGLKAVISRCQQPKAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLQERCFSDGMSYTSDNLYSSASSLSSTQCRTDSSVPSSPYINPAIHSNINTSRFEKEYKKDLWSYRSIISPTTSSHVGNSNNNVLKDVMIWGGGIGCLVGIVNERFVQNSIYSLVPKLLESTAMLDVQNIALGGNHAAIATKQGEVYCWGQGKRGRLGQKIDMDISSPKIVDSLSDIRVKNVVCGEYHTCALTDSGEVYAWGNDVSCSESVDEGRFRSQWLTHKLSLPVEGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNYHSFSSPKEVESLKGLCVRSVACGTWHTAAIIEVIADRFKYNTSTGKLFTWGDGDEARLGHADNGNKLVPTCVSQLVDYDFVQVSCGRMLTLALTNMGKVFAIGSAKYGQLGNPHVKDRAVLVEGMLKQEYVKMISCGSYHAAVLTSSGSVYTWGKGENGQLGLGDTENRYTPCFVEALRDRQVDTITCGPSFTVAVCLHKPISISDQSSCSGCRLAFGFTRKKHNCYNCGLLFCRACSSKKVTDASLAPDKNKAFRVCDSCFDRKQGSSSSSSKHSVLESFNSRNCNNQQIQKHHQNKIGDFTEDRGETNVTNGPLLSVSQSCYRKSMPSGRKVWKNQQESQHDLEDNSSKLGSVPQCGQVPCSAQFGINCTENSVVHETDTSKSDKLLIEEVQRLRAEAKRLEKQCELKDNEILECQQKVQESWSVAKEEAAKCKAAKDVIKALALRLHTLSGKDNHGLEQKSGLQEFLPNLAPIQTDMNSPRNANMDSLSNSPIIFSSALKSKFGRSILLKNDKLTPKTITKAEAQQNTADGLKTVEWVEQYENGVYITLTISPSGEKGVKRVRFSRKRFSQKEAEKWWEENQTKVYHKYEIEGI 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00634 1054 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 66 907 - -
Trre6g00634 1054 SMART fyve_4 655 724 IPR000306 GO:0046872
Trre6g00634 1054 Gene3D - 247 394 IPR009091 -
Trre6g00634 1054 Pfam Transcription factor regulating root and shoot growth via Pin3 996 1049 IPR013591 -
Trre6g00634 1054 ProSiteProfiles BRX domain profile. 995 1050 IPR013591 -
Trre6g00634 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 438 IPR000408 -
Trre6g00634 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 439 490 IPR000408 -
Trre6g00634 1054 PRINTS Chromosome condensation regulator RCC1 signature 543 561 IPR000408 -
Trre6g00634 1054 PRINTS Chromosome condensation regulator RCC1 signature 425 441 IPR000408 -
Trre6g00634 1054 PRINTS Chromosome condensation regulator RCC1 signature 441 455 IPR000408 -
Trre6g00634 1054 PRINTS Chromosome condensation regulator RCC1 signature 315 328 IPR000408 -
Trre6g00634 1054 PRINTS Chromosome condensation regulator RCC1 signature 334 350 IPR000408 -
Trre6g00634 1054 PRINTS Chromosome condensation regulator RCC1 signature 600 621 IPR000408 -
Trre6g00634 1054 PRINTS Chromosome condensation regulator RCC1 signature 384 400 IPR000408 -
Trre6g00634 1054 Pfam Pleckstrin homology domain 23 129 IPR001849 -
Trre6g00634 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 332 383 IPR000408 -
Trre6g00634 1054 Gene3D - 395 662 IPR009091 -
Trre6g00634 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 502 553 IPR000408 -
Trre6g00634 1054 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 661 723 IPR017455 -
Trre6g00634 1054 SUPERFAMILY PH domain-like 22 131 - -
Trre6g00634 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 439 487 IPR000408 -
Trre6g00634 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 554 601 IPR000408 -
Trre6g00634 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 502 550 IPR000408 -
Trre6g00634 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 604 653 IPR000408 -
Trre6g00634 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 332 380 IPR000408 -
Trre6g00634 1054 CDD PH_PLC_plant-like 20 132 - -
Trre6g00634 1054 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 734 IPR013083 -
Trre6g00634 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 605 656 IPR000408 -
Trre6g00634 1054 SUPERFAMILY FYVE/PHD zinc finger 662 727 IPR011011 -
Trre6g00634 1054 Coils Coil 843 877 - -
Trre6g00634 1054 CDD FYVE_like_SF 666 719 - -
Trre6g00634 1054 SUPERFAMILY RCC1/BLIP-II 275 657 IPR009091 -
Trre6g00634 1054 Gene3D - 21 138 IPR011993 -
Trre6g00634 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 554 604 IPR000408 -
Trre6g00634 1054 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 477 487 IPR000408 -
Trre6g00634 1054 Pfam FYVE zinc finger 663 721 IPR000306 GO:0046872
Trre6g00634 1054 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 591 601 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00634 Trre-Chr6 4842687 4848446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00634 990 1052 Major Intrinsic Protein MIP AT1G31880 42.857 1.12e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00634 - - gmx:100794953 1592.4