Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00626 ATGGTTCTCTCAAAGACATCCTCCGAATCCGATGTCTCTGTCCATTCAACCTTTGCTTCTCGCTATGTTAGAACTTCACTTCCCAGATTCAAGATGCCTGAGGAGTCGATACCGAAGGACGCGGCATACCAAATAATAAACGATGAATTGATGTTGGATGGAAATCCTAGATTGAATCTAGCATCCTTTGTGACTACTTGGATGGAGCCTGAGTGTGATAAGCTTATTATGGCTTCCATCAACAAGAACTATGTGGACATGGACGAATACCCTGTCACCACTGAACTTCAGAATCGGTGTGTTAACATGATAGCTCATCTTTTCAATGCACCACTTGAAGAAAATGAGGCTGCAGTTGGTGTTGGCACTGTTGGCTCATCAGAGGCTATAATGTTAGCTGGATTGGCATTCAAAAGAAAGTGGCAGAACAAAAGGAAACAAGAGGGAAAGCCTTTTGACAAACCCAACATTGTCACTGGAGCCAATGTCCAGGTTTGTTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAATTGAAAGAGGTGAAACTAAGTGAAGGATACTATGTAATGGACCCTAAAAAGGCTGTAGAATTGGTGGATGAGAATACCATTTGTGTTGCTGCTATCCTTGGTTCCACATTAAATGGAGAGTTTGAAGATGTTAAAACCTTAAATGATCTCCTAGTTGAAAAGAATAAGGAAACCGGATGGGACACTCCTATTCATGTCGATGCAGCTAGCGGCGGCTTCATTGCCCCATTTATTTATCCGGAGCTCGAGTGGGATTTTCGCTTACCGCTAGTGAAGAGCATCAACGTTAGTGGTCACAAATATGGTCTTGTCTATGCCGGAATTGGTTGGGCTGTTTGGAGAAGCAAGGAAGACTTGCCTGAGGAACTCATTTTTCACATCAACTATCTAGGAGCTGATCAACCTACCTTTACCCTCAATTTTTCCAAAGGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTACGAGGGGTATAAAAATGTGATGGAAAATTGTAGAGACAACATGATAGTATTGAAAGAGGGGCTTGAGAAAATGGGACGATTCAACATTGTGTCGAAAGACAATGGTGTTCCTCTAGTGGCTTTCACATTGAAGGACCACACAAACTTTGATGAATTCCAAATCTCTGACTTGTTGAGGCGCTTCGGATGGATCGTTCCGGCATACAGCATGCCCCCGGATGCTCAACACATAACCGTTTTACGTGTTGTCATAAGGGAAGATTTCTCGAGGACTTTAGCGGAACGCCTTGTGGCTGATGTCGAGAAAGTGTTACATGAGCTTGATACACTTGCGGCGAGGATAAGGATGATAAGTAGCAGTAGTAATGTTACAGTTACTGAAGAAGTTGTGAAAAATAATGGTCAAGTTGTGGCTACTAAAAAGAGTGCTTTGGAGACTCAGAGAGAAATCACTGCTGTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGCTGAATGATAAGATGAATGGTGTTTGCTAG 1530 0.4268 MVLSKTSSESDVSVHSTFASRYVRTSLPRFKMPEESIPKDAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEENEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKQEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPKKAVELVDENTICVAAILGSTLNGEFEDVKTLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWAVWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCRDNMIVLKEGLEKMGRFNIVSKDNGVPLVAFTLKDHTNFDEFQISDLLRRFGWIVPAYSMPPDAQHITVLRVVIREDFSRTLAERLVADVEKVLHELDTLAARIRMISSSSNVTVTEEVVKNNGQVVATKKSALETQREITAVWKKFVLERKKLNDKMNGVC 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00626 509 Gene3D - 1 65 - -
Trre6g00626 509 FunFam Glutamate decarboxylase 1 65 - -
Trre6g00626 509 FunFam Glutamate decarboxylase 66 360 - -
Trre6g00626 509 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Trre6g00626 509 CDD DOPA_deC_like 59 439 - -
Trre6g00626 509 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre6g00626 509 FunFam Glutamate decarboxylase 361 448 - -
Trre6g00626 509 Gene3D - 66 360 IPR015421 GO:0003824
Trre6g00626 509 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Trre6g00626 509 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Trre6g00626 509 Gene3D - 361 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00626 Trre-Chr6 4770251 4775778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00626 1 509 Calmodulin-binding Proteins AT5G17330 83.170 0.0 885