Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00622 ATGCCCTTGGAAGGGATTTTCATTGAACCAACTTCAACACCACCTGATCTTTCTCTTCATATAAGTCCACCAAGCACTTCTTCATCTTTGATTTGCAACAATAACTCAACTCATCAAGTACTTAATTATGAAGCTCACAATTCTTCAAGGACTCAGGCTCAGGCTCAGACTCAGACTCAGGCTCACACTGAACTATCTCTTGGAAGAAATTTTAGTGGCGGTGTTGGTGGAGGTGGAGCTCAAGAACAACCACAACGGCCACCGCATCAACAACAACAACATAACCCTTACTTTCCTCACCTCCAACATCACCAAAACTCTACCACTTCAACAACAACACCAACAAGTATAAGTCCTAATTCAACTCACATGAATCACATAAATTATGGTGTTTCATTGCTTGATGTATCATCATCGTCATCAGAAGCTTTGAGACCGATTAAAGGGATTCCGGTGTATCACAACCGATCATTCCCTTTTTTACCGGCCATGGAACATTCAAGAGAAAAAGATCCCAAGATGTGTTTATATCACCACATGCCTAATTCGCCAACACCGACTCCTTCTTCATCTTCTTCTCCACTTTCCCCCTACATCGCTGCAGGAGGTTTAGATCCCATGTCGTTTTTAAACTCTAGTGGCTCTGCAGCGGCTTATAGAGCCGCTGTAGCCACAAGGTTTAATAACGAACCTTTCAAATCTCATCAATATCCATTGCACCATCATCATCACCATCACTCACACTATGGTAGTGTTGGACTTGGAAGCTCAGAAGCATCTATGATGAGATCAAGGTTTTTGCCAAAGTTACCAACAAAGAGAAGCATGAGAGCTCCAAGAATGCGATGGACGAGTACTCTCCACGCTCGATTCGTTCATGCTGTTGAGCTCCTCGGCGGCCATGAAAGAGCAACACCAAAGTCAGTATTGGAACTAATGGATGTGAAAGATCTCACATTAGCTCATGTAAAAAGTCATTTGCAGATGTATCGAACTGTTAAGACAACTGACAAACCTGCAGCTTCTTCAGGCTTTTCAGATGGATCTGGAGAAGATGATGTGCCTCAAATTGGAAGCAATGGTGGAATTCGACAATTTTCCGACCAAAGAGGGTTAGCAGATCGGCCATTACAACAAGATATGGATTACTCTTCCACCACCACTTTATGGAGTAACTCTTCAAGTAGTAGAGAACCATGGCCACCAACTAGTTCTAACGACGTAGATGGTTTCAGACCAACTATCTTCCAATCACAACCAATATCAGGAGGGCATCAAATTCAGGAATGTGATTCAAATCAACTGAAGAACAATTTGTCAGGATCTAATTTAGAGTGTAAGAACCCAAGCTTGGAGTTCACATTAGGCATACCAGATTGGAATGGCAAAGGACAAGCCTAA 1401 0.4254 MPLEGIFIEPTSTPPDLSLHISPPSTSSSLICNNNSTHQVLNYEAHNSSRTQAQAQTQTQAHTELSLGRNFSGGVGGGGAQEQPQRPPHQQQQHNPYFPHLQHHQNSTTSTTTPTSISPNSTHMNHINYGVSLLDVSSSSSEALRPIKGIPVYHNRSFPFLPAMEHSREKDPKMCLYHHMPNSPTPTPSSSSSPLSPYIAAGGLDPMSFLNSSGSAAAYRAAVATRFNNEPFKSHQYPLHHHHHHHSHYGSVGLGSSEASMMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGFSDGSGEDDVPQIGSNGGIRQFSDQRGLADRPLQQDMDYSSTTTLWSNSSSSREPWPPTSSNDVDGFRPTIFQSQPISGGHQIQECDSNQLKNNLSGSNLECKNPSLEFTLGIPDWNGKGQA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00622 466 MobiDBLite consensus disorder prediction 46 117 - -
Trre6g00622 466 MobiDBLite consensus disorder prediction 84 117 - -
Trre6g00622 466 Gene3D - 278 335 - -
Trre6g00622 466 SUPERFAMILY Homeodomain-like 276 332 IPR009057 -
Trre6g00622 466 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 15 463 IPR044847 GO:0000976|GO:0006355|GO:0010158
Trre6g00622 466 MobiDBLite consensus disorder prediction 386 411 - -
Trre6g00622 466 NCBIfam myb-like DNA-binding domain, SHAQKYF class 279 332 IPR006447 GO:0003677
Trre6g00622 466 MobiDBLite consensus disorder prediction 334 370 - -
Trre6g00622 466 MobiDBLite consensus disorder prediction 46 67 - -
Trre6g00622 466 MobiDBLite consensus disorder prediction 9 33 - -
Trre6g00622 466 FunFam Myb family transcription factor 277 335 - -
Trre6g00622 466 MobiDBLite consensus disorder prediction 15 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00622 Trre-Chr6 4708561 4714121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00622 1 463 G2-like Transcription Factor Family AT5G16560 40.283 2.07e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre6g00622 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00622 - - ccaj:109796302 580.482