Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00607 ATGAGACCAATTTTTGATCTTGAAGTAGAGGCCACAGAAGAATATGAATCTGAAGTCAGTAGCCATGATGTTGCTTCCAACACCTCCCCAAACTCTTCCATCCTAACAAATCCAACAGAACCTATCTCACTGGACTTATCACTTAATTTCAACTTGAACAATGACTTGGTTGCTAGAGATTCAACAGGAATCTCATTCTCAAGCACTAGTGAGAGCAGCAATGAACCTATTATCCCAAGAGTTTTCTCTTGCAATTACTGTCGGCGCAAATTTTATAGCTCTCAAGCACTCGGTGGACACCAAAACGCGCACAAAAGAGAAAGAACATTAACAAAACGAGCAATGCGAATGGGACTATTCACCGAGAGGTATGCAAGTTTAGCATCTCTCCCTCTAAATGGTAATTCTTTCAGGTCTTTAGGTATAAAGACACACTCTTCACTACACCATGGTTTTTCGCCACCAACAATAAGGCCTATTCCGGAGATAAAAAGTAATGCGAGATTCAAACAAGGATGTATCGGACATCCGATATTATTGGAGGATGATGAGACAGAATTGTTCTGGCAAGGTAGTTTCCATCAGGTTACTGAGGGTGGTAGTAATATTAATAGTACTCATCAGAGTTCAAATCTGTGTTTTGCTGAGGTGAATGTGAAACCATTGGTTGATAATATAGATATTAATTCAGCACCTGAATTAACATTGAAACTTTGA 717 0.3933 MRPIFDLEVEATEEYESEVSSHDVASNTSPNSSILTNPTEPISLDLSLNFNLNNDLVARDSTGISFSSTSESSNEPIIPRVFSCNYCRRKFYSSQALGGHQNAHKRERTLTKRAMRMGLFTERYASLASLPLNGNSFRSLGIKTHSSLHHGFSPPTIRPIPEIKSNARFKQGCIGHPILLEDDETELFWQGSFHQVTEGGSNINSTHQSSNLCFAEVNVKPLVDNIDINSAPELTLKL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00607 238 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Trre6g00607 238 MobiDBLite consensus disorder prediction 21 36 - -
Trre6g00607 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Trre6g00607 238 FunFam Zinc finger protein 2 60 128 - -
Trre6g00607 238 SUPERFAMILY beta-beta-alpha zinc fingers 80 110 IPR036236 -
Trre6g00607 238 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 32 156 IPR044246 GO:0009788
Trre6g00607 238 MobiDBLite consensus disorder prediction 16 36 - -
Trre6g00607 238 Gene3D Classic Zinc Finger 61 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00607 Trre-Chr6 4631054 4631770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00607 1 238 C2H2 Transcription Factor Family AT1G66140 44.280 9.97e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g00607 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00607 - - mtr:11409715 337.421