Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00605 ATGGTTTTGTCATGGACAAGAAGAAACATGTTCCGTCGTACCCACAAAGCAAAAGAACAACTTTCCGGTGGCGATTTAACGGTGGAGGAGATAACAATCCCAACCCATTTCCGGTGTCCGGTGAGTCTTGACTTGATGAAAGATCCAGTTACTTTGTCAACAGGAATCACTTATGACAGAGTAAGTATTGAAAAATGGATTGAATCTGGTAACAAAACATGCCCAGTTACAAATCAGAAACTTTTAACCTTTGAAATAACACCAAATCATACCATAAGAAAAATGATTCAAAGTTGGTGTGTTGAAAATAGTTCTTATGGGATTGAAAGAATTCCAACTCCTCGTATACCTGTTTCTAGTTACGAGGTTTCTGAGGTTTGTACTAGGTTGTTGTCGGGTTGTAAAAGTTTAGATGAGAAAAAATGTGTTGAGTTTGTTGGAAAGATTAAGGTTTGGTGGAGAGAGAGTGAGAGAAATAAAAGGGTTATTGTTGGAAATGGTGCTTTTTCTATTCTTGCAACGGTTTTTGATTCTTTTTCATGTGTTTCATTTGAGAAACATGTTGTTATTTTAGAAGAGATTTTGGAGATTTTAACATGGATGGTTATGACTCCTTTTGGTGAAACAAAATCAAGATTGTTTTCATCATCAAATTCTTTAAGTTGTTTGGTTTGGTTTCTTGATGGTAAAGATTTAGGAGCAAGACAAAATGCTGTTTTGTTACTTAAAGAAATTATGAATGTTGAGGAGTTATCAAAAGTTGAAGGTGTTGTTGAAGGTTTGATTAAGATTATTAAGGAACCAATTGGGTCAAGTGCTACAAAAGCATGTTTGACCACAATTTTCAAGTTGGTTTCATCAACTAAAAATAGAGTTGAAATTGGTGAAAGATTTGTTGAATTGGGTTTGGTTTCATTTTTACTTGAAACAATTGTTGATGGAGAAAAAAGGATATGTGAGAAAGCACTTGGTGTGTTGGATTGTTTATGTGATTTCAAAAAAGGAAATGAGGTTATTAAAATGAATGCTTTAACTTTACCTCTTGTGATTAAGAAACTTTTGAGGGTTTCTCCTTTAGCTTCTAGTTTTGTTGTTGGTATTGTTAGAAAGATAGTATGTGAGAAAAAGGAAGAAAGAGTTTTGATTGAGGCAATTCAACTTGGTGCTTTTCAAAAATTGTTGGTTATGTTGCAAGTTGGATGTGAGGAGAAAACAAAGGAGAATACTAATGAGTTGTTGAAATTGTTGAATGGTTATAGAAGCAAAGCAGAATGTGTTGACTCTTCATTAGATTTCAAGTATCTTAAGAACTAA 1314 0.3364 MVLSWTRRNMFRRTHKAKEQLSGGDLTVEEITIPTHFRCPVSLDLMKDPVTLSTGITYDRVSIEKWIESGNKTCPVTNQKLLTFEITPNHTIRKMIQSWCVENSSYGIERIPTPRIPVSSYEVSEVCTRLLSGCKSLDEKKCVEFVGKIKVWWRESERNKRVIVGNGAFSILATVFDSFSCVSFEKHVVILEEILEILTWMVMTPFGETKSRLFSSSNSLSCLVWFLDGKDLGARQNAVLLLKEIMNVEELSKVEGVVEGLIKIIKEPIGSSATKACLTTIFKLVSSTKNRVEIGERFVELGLVSFLLETIVDGEKRICEKALGVLDCLCDFKKGNEVIKMNALTLPLVIKKLLRVSPLASSFVVGIVRKIVCEKKEERVLIEAIQLGAFQKLLVMLQVGCEEKTKENTNELLKLLNGYRSKAECVDSSLDFKYLKN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00605 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 110 IPR013083 -
Trre6g00605 437 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Trre6g00605 437 CDD RING-Ubox_PUB 34 85 IPR045210 -
Trre6g00605 437 PANTHER WDSAM1 PROTEIN 28 426 IPR045185 GO:0061630
Trre6g00605 437 Gene3D - 121 420 IPR011989 -
Trre6g00605 437 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Trre6g00605 437 SUPERFAMILY RING/U-box 24 109 - -
Trre6g00605 437 Pfam U-box domain 33 104 IPR003613 GO:0004842|GO:0016567
Trre6g00605 437 SUPERFAMILY ARM repeat 132 403 IPR016024 -
Trre6g00605 437 FunFam RING-type E3 ubiquitin transferase 27 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00605 Trre-Chr6 4613724 4615037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00605 30 436 U-box Gene Family AT5G37490 46.618 1.76e-113 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00605 - - gmx:548086 582.793