Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00597 ATGTCGCGCGAGAAGCTAGCCGGCTTGTCTCTTGATGACATCTTAGCCAATCAAAAAAGAGCCGGCTCTGCACCACAACCACCACCCCCTAAAAGCCGAACCCTCTTAGACATCATCAGAGAAGACGAAACCAACAAAAAAGATCGCAGATCTTGGAAAGCATTCAAGGATAAGCTTCGGCTCAAGCGCGCGGGCTCTGCTTGGACATCATCAATTCACATTCCAACATCAGATATTCCAATCCAAAATCCAAACAGCAGAATCTTTTCCCAATTCGGTCGTCGTGACTCAGTTCGAGTGCAAACTCACCAAGACTCGGACATGTCATCTCCGGCCATGACTCACCAAGTGGAAGACCTCGATCCATCAAATGAATCCAATCCACCAGTTTCTAAACCACAATTTACTCGCAAGAGCTCAACCCGTATAACAGGAGATTCCCCTGAGCATTCGGCCAGTGGGAGAAATCTTCGACAACTCTCACGCACGAATTCCTCCAGTGTATCATCGGAGCCATTTCGAAGAGAGCGTGTGGTGACTTTCCGAGATAGCTTCGACGATGATGAGCCTGGCGATGATAATCACCTGGAGACGGGCAGGGCATTATCAGCGAGGGAGGCGGTGGCGGCGCAGGAGGCAGCAGAAGCTGCGGCAGAGGAGGCTGCAGCAGGGCCTCCAACAATGTCGTTGATGGATTTGTTAGGGGAGACAGATAGAGAATTGGGGTTGGAAGGGTCAAGGTATATATTGAGTGATGAAGATGAAGATGATGATTATTATGATGATGAAGAAGATGATGAAGATGGAGAAAATGCTTTGGAACACACTTGCTGTATTTGTATGGTGAAGCATAAGGGTGCTGCTTTGGCAGCTTGTGGTCATAGTTTCTGTAGGATGTGTTCAAGGGAGCTTATGGTTGCTAAGGGAAATTGTCCACTTTGTAATAATTTCATTTTAGAGATTCTTGACATTTTTTGA 978 0.4714 MSREKLAGLSLDDILANQKRAGSAPQPPPPKSRTLLDIIREDETNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDIPIQNPNSRIFSQFGRRDSVRVQTHQDSDMSSPAMTHQVEDLDPSNESNPPVSKPQFTRKSSTRITGDSPEHSASGRNLRQLSRTNSSSVSSEPFRRERVVTFRDSFDDDEPGDDNHLETGRALSAREAVAAQEAAEAAAEEAAAGPPTMSLMDLLGETDRELGLEGSRYILSDEDEDDDYYDDEEDDEDGENALEHTCCICMVKHKGAALAACGHSFCRMCSRELMVAKGNCPLCNNFILEILDIF 325
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00597 325 MobiDBLite consensus disorder prediction 96 173 - -
Trre6g00597 325 SMART ring_2 277 314 IPR001841 -
Trre6g00597 325 Pfam Zinc finger, C3HC4 type (RING finger) 274 318 - -
Trre6g00597 325 ProSiteProfiles Zinc finger RING-type profile. 277 315 IPR001841 -
Trre6g00597 325 MobiDBLite consensus disorder prediction 1 33 - -
Trre6g00597 325 SUPERFAMILY RING/U-box 276 321 - -
Trre6g00597 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 325 IPR013083 -
Trre6g00597 325 PANTHER OS01G0917900 PROTEIN 2 325 - -
Trre6g00597 325 MobiDBLite consensus disorder prediction 96 174 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre6g00597 Trre-Chr6 4541611 4543057 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00597 6 325 C3H Transcription Factor Family AT3G07120 36.264 1.83e-53 177