Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00587 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGTTTGAAGAAAGGACCATGGACTGCAGAGGAAGATAAAAAGCTCATAAATTTCATCCTTACTAATGGCCAATGTTGTTGGAGAGCTGTTCCTAAGTTAGCAGGGTTGTTAAGGTGTGGAAAAAGTTGTAGGCTCAGATGGACAAATTACCTAAGACCAGACCTAAAGAGAGGACTTTTATCAGAATATGAAGAAAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGATGGTCTAAAATTGCTTCTCATCTACCTGGACGAACCGATAATGAGATTAAAAATCATTGGAATACTCACATAAAGAAAAAGCTTAAAAAAATGGGAATTGATCCGGTTACACACAAGTTACTCTCTAATGCAATGGATCAAACAAAATCTGAAAAACAACAACCATTGCAAGAACAAAAACAACAAGAACAATCTTCTTCACCTATTGAACATGACAAGAACAAGGAACCTCAAAAGCAAGAAACATCATTTGAATCATCAACAATAACTGAAGCTCAAGAACAAGACCAAGTTATGACACCACTTTTTGATTCACTGGAACTAATGAATGAGTTCTTAATAGAAGATGTTCCAATAATAAACTCAAATGAAATTCTAATTCCGTGTGTTCCTTCTTCTTCATCGAACACGACATCAACATCATCATCATCAAATTCAAATTCATCTAACTTCCTTGAAGACTTACTTCTCCCTGATTTTGATTGGTCACATAATTTTGATGTGAATAATAACAATATTGAAAATAATAACTATAATGAAAATAGTAATATTAATAATAATAATAATAATAATATTAATATGGCATTATGGGATGATGACTTTATTAGAAGTTGGGACTTTGTGATCAATGATCATGATGATGGTGACAGAAAGCAAGTGTTTGATGCTCCTCATAATCAGTATCCAAAAGTGATTATGGATTCAGAATCATGGGCCTATGGAATGTTTTGA 996 0.3343 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKLLSNAMDQTKSEKQQPLQEQKQQEQSSSPIEHDKNKEPQKQETSFESSTITEAQEQDQVMTPLFDSLELMNEFLIEDVPIINSNEILIPCVPSSSSNTTSTSSSSNSNSSNFLEDLLLPDFDWSHNFDVNNNNIENNNYNENSNINNNNNNNINMALWDDDFIRSWDFVINDHDDGDRKQVFDAPHNQYPKVIMDSESWAYGMF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00587 331 SMART sant 66 114 IPR001005 -
Trre6g00587 331 SMART sant 13 63 IPR001005 -
Trre6g00587 331 Gene3D - 11 67 - -
Trre6g00587 331 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 261 - -
Trre6g00587 331 FunFam Myb transcription factor 71 133 - -
Trre6g00587 331 CDD SANT 16 61 IPR001005 -
Trre6g00587 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre6g00587 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre6g00587 331 MobiDBLite consensus disorder prediction 134 183 - -
Trre6g00587 331 MobiDBLite consensus disorder prediction 169 183 - -
Trre6g00587 331 FunFam MYB transcription factor 11 67 - -
Trre6g00587 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre6g00587 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre6g00587 331 Gene3D - 71 116 - -
Trre6g00587 331 CDD SANT 74 112 IPR001005 -
Trre6g00587 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre6g00587 331 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Trre6g00587 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre6g00587 331 MobiDBLite consensus disorder prediction 134 152 - -
Trre6g00587 331 MobiDBLite consensus disorder prediction 153 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00587 Trre-Chr6 4420696 4422858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00587 1 331 MYB Transcription Factor Family AT5G16600 47.632 7.01e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g00587 Myb_DNA-binding 9.7e-13 CL0123