LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g00584	ATGCACAAAGAGAATAGTGGTCTTGAAGGCCGTTCTATAGATGTTGGAAATCTTAAAATAAATGTCCATAAGGTCATCGCTGAAGGAGGGTTCTCATGTGTCTACTTGGCTCGTGATGCTGTACATATCTCGAAACAGTATGCTTTGAAGCATATAATATGCAATGATGACGAATCACTTGGGTTAGTGAAGAAGGAGATATCTGTGATGAAGTTGCTGATAGGACATCCCAATGTGGTCAAACTTCATGCTCATGCCATCTATGATATGGGTAGGACAAAAGAGGCATTCCTTGTAATGGAATTTTGTGAGAAGTCTCTGGTTAGTGTGCTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAAACAGGTTCTTTTAATCTTCAGGGATGTGTGTAATGCAGTCTTCGCTATGCACTGCCAGTCCCCACCTATTGCTCACCGAGACTTGAAAGCAGAGAATCTTTTGTTAAGTTCAGATGGTTTATGGAAGTTGTGTGATTTTGGAAGCATTTCCACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGAATTGAGGAAGATAATATCAGAAAGTACACAACCCCCGCCTACAGAGCTCCTGAGATGTGGGATCTGTTCCTGAAAGAAGTAATTAATGAGAAGGTGGACATATGGGCACTTGGCTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATTTACCTAAATTCAGTTCAACCCTCACAGACTTGATCAGAGACATGCTTCAAGCTAGACCAGATGACCGACCAGATATCACGCAGGTTTGGTTTCGTGTTAATGAGCAGCTGCCTATTGATTTACAAAAGTCATTACCTGATAGGCCACCTGAATCACCCTCCTCCAACAATCATGAAGGTGCTTCAAAGTCTACACAGAAATCAAGTCCAATGCCTCGCAGAAATGCGCCTCCTCCTCCATCAGTTGGAGAACCCAAAACTACCCCTCAGCCATCTCTTGGTCCTAGGGGAGGGGATAGTGGGGGCCAGCTTGGTGCTTTCTGGTCCACTATGCATGCAAAGGATTCACTTGTCCCTGAGGAAAAGGGAAAACCTATGTATGATGAAGAACGATCTAGTCACCATATTTCATCGAAGCATGACAAAGTTCGTCCGGACAATGATCAGTTACCCAAGAATGTTGGCACTAAGAATGTGGCTAACACACAAACTCAGACTGTAAAGAGCAACATACATGGAAAGTTACACAAGCCTGATGCTGCCTCTTCCAAAGACTTTGAAATTAATTTTTTCCCTGATACAGATCATGCAAGTCAGAGACATATGTCAAATCTGGAGAAGAAGAATGATAACTTCCAAGACCAGACTTTTAACACTTTTGTTGCAGAATTTGATACTGCTAAGCTTAACTCCGGGCACGGTAACAAATCCACAAGGGAAGAAGCATTAGAGTCTGAGGTGGAGAAACTCAAAGAGCAGCTGAAGGACACTAACTTAGAGAAATCTGAAATTACTGCTAAGTATGAAAAGCTTACTGCTATCTGCCGTTCACAAAGGCAAGAACTACAGGATCTCAAGCAAGCACTTGCAGCAAGAACTCCATCTCCAAATAGAGAGATTTTGAGAACCTCACCTGGAGTTGCATCACCTGCGTCTTTGCAGGATAGAAGTGAATGGAAAACACCTAGTTCAGAACCAAAGTCATCATGGCAAGCTTTCCCAGAGGCAACTGAATCGTTGAAATCCCTTTCAGCGGACAATGCTTCAAAATCTGTCAGGTCAAGAAATGGTCAGCAGAACAAGCAGGCTACTCAACCAGCTTCTGATTTTGATTCTTGGGGTTTTGGCACAGATACATTTAGTGCTGCTCGTGCTGGTAGTGGTAGCCAACAGATGCCAAGACCTGGTGAAGGGAGTAAAGCTCATGTTTTTGGTGAGGCAAAGGGTTTTGAGAGCAAGTCAAATTCTCAACCTGCTGGATGGGCAGGTTTTTAA	2034	0.4326	MHKENSGLEGRSIDVGNLKINVHKVIAEGGFSCVYLARDAVHISKQYALKHIICNDDESLGLVKKEISVMKLLIGHPNVVKLHAHAIYDMGRTKEAFLVMEFCEKSLVSVLESRGAGYFDEKQVLLIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLSSDGLWKLCDFGSISTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLKEVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKFSSTLTDLIRDMLQARPDDRPDITQVWFRVNEQLPIDLQKSLPDRPPESPSSNNHEGASKSTQKSSPMPRRNAPPPPSVGEPKTTPQPSLGPRGGDSGGQLGAFWSTMHAKDSLVPEEKGKPMYDEERSSHHISSKHDKVRPDNDQLPKNVGTKNVANTQTQTVKSNIHGKLHKPDAASSKDFEINFFPDTDHASQRHMSNLEKKNDNFQDQTFNTFVAEFDTAKLNSGHGNKSTREEALESEVEKLKEQLKDTNLEKSEITAKYEKLTAICRSQRQELQDLKQALAARTPSPNREILRTSPGVASPASLQDRSEWKTPSSEPKSSWQAFPEATESLKSLSADNASKSVRSRNGQQNKQATQPASDFDSWGFGTDTFSAARAGSGSQQMPRPGEGSKAHVFGEAKGFESKSNSQPAGWAGF	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g00584	677	PANTHER	SERINE/THREONINE PROTEIN KINASE	4	653	-	-
	Trre6g00584	677	MobiDBLite	consensus disorder prediction	550	628	-	-
	Trre6g00584	677	Gene3D	Transferase(Phosphotransferase) domain 1	3	298	-	-
	Trre6g00584	677	MobiDBLite	consensus disorder prediction	325	339	-	-
	Trre6g00584	677	MobiDBLite	consensus disorder prediction	368	401	-	-
	Trre6g00584	677	Coils	Coil	486	541	-	-
	Trre6g00584	677	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	145	157	IPR008271	GO:0004672\|GO:0006468
	Trre6g00584	677	MobiDBLite	consensus disorder prediction	295	433	-	-
	Trre6g00584	677	MobiDBLite	consensus disorder prediction	301	324	-	-
	Trre6g00584	677	SMART	serkin_6	20	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00584	677	MobiDBLite	consensus disorder prediction	404	424	-	-
	Trre6g00584	677	Pfam	Protein kinase domain	22	282	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00584	677	SUPERFAMILY	Protein kinase-like (PK-like)	21	334	IPR011009	-
	Trre6g00584	677	FunFam	probable serine/threonine-protein kinase DDB_G0280111	3	298	-	-
	Trre6g00584	677	CDD	STKc_GAK_like	19	291	-	-
	Trre6g00584	677	MobiDBLite	consensus disorder prediction	539	677	-	-
	Trre6g00584	677	ProSiteProfiles	Protein kinase domain profile.	20	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00584	677	MobiDBLite	consensus disorder prediction	663	677	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g00584	Trre-Chr6	4400902	4403887	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g00584	19	285	Miscellaneous Gene Families	AT2G34180	30.249	3.29e-21	95.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Trre6g00584		Pkinase	1e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g00584	K08853		-	gmx:100780879	1021.54