LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g00583	ATGTGGAAATTTAAGCCGTTCATGCACAAAGAGAATAGTGGTCTTGAAGGCCGTTCTATAGATGTTGGAAATCTTAAAATAAATGTCCATAAGGTCATCGCTGAAGGAGGGTTCTCATGTGTCTACTTGGCTCGTGATGCTGTACATATCTCGAAACAGTATGCTTTGAAGCATATAATATGCAATGATGACGAATCACTTGGGTTAGTGAAGAAGGAGATATCTGTGATGAAGTTGCTGATAGGACATCCCAATGTGGTCAAACTTCATGCTCATGCCATCTATGATATGGGTAGGACAAAAGAGGCATTCCTTGTAATGGAATTTTGTGAGAAGTCTCTGGTTAGTGTGCTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAAACAGGTTCTTTTAATCTTCAGGGATGTGTGTAATGCAGTCTTCGCTATGCACTGCCAGTCCCCACCTATTGCTCACCGAGACTTGAAAGCAGAGAATCTTTTGTTAAGTTCAGATGGTTTATGGAAGTTGTGTGATTTTGGAAGCATTTCCACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGAATTGAGGAAGATAATATCAGAAAGTACACAACCCCCGCCTACAGAGCTCCTGAGATGTGGGATCTGTTCCTGAAAGAAGTAATTAATGAGAAGGTGGACATATGGGCACTTGGCTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATTTACCTAAATTCAGTTCAACCCTCACAGACTTGATCAGAGACATGCTTCAAGCTAGACCAGATGACCGACCAGATATCACGCAGGTTTGGTTTCGTGTTAATGAGCAGCTGCCTATTGATTTACAAAAGTCATTACCTGATAGGCCACCTGAATCACCCTCCTCCAACAATCATGAAGGTGCTTCAAAGTCTACACAGAAATCAAGTCCAATGCCTCGCAGAAATGCGCCTCCTCCTCCATCAGTTGGAGAACCCAAAACTACCCCTCAGCCATCTCTTGGTCCTAGGGGAGGGGATAGTGGGGGCCAGCTTGGTGCTTTCTGGTCCACTATGCATGCAAAGGATTCACTTGTCCCTGAGGAAAAGGGAAAACCTATGTATGATGAAGAACGATCTAGTCACCATATTTCATCGAAGCATGACAAAGTTCGTCCGGACAATGATCAGTTACCCAAGAATGTTGGCACTAAGAATGTGGCTAACACACAAACTCAGACTGTAAAGAGCAACATACATGGAAAGTTACACAAGCCTGATGCTGCCTCTTCCAAAGACTTTGAAATTAATTTTTTCCCTGATACAGATCATGCAAGTCAGAGACATATGTCAAATCTGGAGAAGAAGAATGATAACTTCCAAGACCAGACTTTTAACACTTTTGTTGCAGAATTTGATACTGCTAAGCTTAACTCCGGGCACGGTAACAAATCCACAAGGGAAGAAGCATTAGAGTCTGAGGTGGAGAAACTCAAAGAGCAGCTGAAGGACACTAACTTAGAGAAATCTGAAATTACTGCTAAGTATGAAAAGCTTACTGCTATCTGCCGTTCACAAAGGCAAGAACTACAGGATCTCAAGCAAGCACTTGCAGCAAGAACTCCATCTCCAAATAGAGAGATTTTGAGAACCTCACCTGGAGTTGCATCACCTGCGTCTTTGGATAGAAGTGAATGGAAAACACCTAGTTCAGAACCAAAGTCATCATGGCAAGCTTTCCCAGAGGCAACTGAATCGTTGAAATCCCTTTCAGCGGACAATGCTTCAAAATCTGTCAGGTCAAGAAATGGTCAGCAGAACAAGCAGGCTACTCAACCAGCTTCTGATTTTGATTCTTGGGGTTTTGGCACAGATACATTTAGTGCTGCTCGTGCTGGTAGTGGTAGCCAACAGATGCCAAGACCTGGTGAAGGGAGTAAAGCTCATGTTTTTGGTGAGGCAAAGGGTTTTGAGAGCAAGTCAAATTCTCAACCTGCTGGATGGGCAGGTTTTTAA	2052	0.4318	MWKFKPFMHKENSGLEGRSIDVGNLKINVHKVIAEGGFSCVYLARDAVHISKQYALKHIICNDDESLGLVKKEISVMKLLIGHPNVVKLHAHAIYDMGRTKEAFLVMEFCEKSLVSVLESRGAGYFDEKQVLLIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLSSDGLWKLCDFGSISTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLKEVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKFSSTLTDLIRDMLQARPDDRPDITQVWFRVNEQLPIDLQKSLPDRPPESPSSNNHEGASKSTQKSSPMPRRNAPPPPSVGEPKTTPQPSLGPRGGDSGGQLGAFWSTMHAKDSLVPEEKGKPMYDEERSSHHISSKHDKVRPDNDQLPKNVGTKNVANTQTQTVKSNIHGKLHKPDAASSKDFEINFFPDTDHASQRHMSNLEKKNDNFQDQTFNTFVAEFDTAKLNSGHGNKSTREEALESEVEKLKEQLKDTNLEKSEITAKYEKLTAICRSQRQELQDLKQALAARTPSPNREILRTSPGVASPASLDRSEWKTPSSEPKSSWQAFPEATESLKSLSADNASKSVRSRNGQQNKQATQPASDFDSWGFGTDTFSAARAGSGSQQMPRPGEGSKAHVFGEAKGFESKSNSQPAGWAGF	683

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g00583	683	Coils	Coil	493	548	-	-
	Trre6g00583	683	ProSiteProfiles	Protein kinase domain profile.	27	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00583	683	MobiDBLite	consensus disorder prediction	332	346	-	-
	Trre6g00583	683	MobiDBLite	consensus disorder prediction	375	408	-	-
	Trre6g00583	683	MobiDBLite	consensus disorder prediction	302	440	-	-
	Trre6g00583	683	PANTHER	SERINE/THREONINE PROTEIN KINASE	1	659	-	-
	Trre6g00583	683	MobiDBLite	consensus disorder prediction	546	683	-	-
	Trre6g00583	683	MobiDBLite	consensus disorder prediction	575	634	-	-
	Trre6g00583	683	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Trre6g00583	683	SMART	serkin_6	27	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00583	683	MobiDBLite	consensus disorder prediction	669	683	-	-
	Trre6g00583	683	CDD	STKc_GAK_like	26	298	-	-
	Trre6g00583	683	FunFam	probable serine/threonine-protein kinase DDB_G0280111	10	305	-	-
	Trre6g00583	683	Gene3D	Transferase(Phosphotransferase) domain 1	10	305	-	-
	Trre6g00583	683	MobiDBLite	consensus disorder prediction	308	331	-	-
	Trre6g00583	683	MobiDBLite	consensus disorder prediction	411	431	-	-
	Trre6g00583	683	SUPERFAMILY	Protein kinase-like (PK-like)	28	341	IPR011009	-
	Trre6g00583	683	Pfam	Protein kinase domain	29	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g00583	Trre-Chr6	4400881	4403887	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g00583	26	292	Miscellaneous Gene Families	AT2G34180	30.249	3.26e-21	95.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Trre6g00583		Pkinase	1.1e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g00583	K08853		-	gmx:100780879	1037.71