Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00581 ATGTGGAAATTTAAGCCGTTCATGCACAAAGAGAATAGTGGTCTTGAAGGCCGTTCTATAGATGTTGGAAATCTTAAAATAAATGTCCATAAGGTCATCGCTGAAGGAGGGTTCTCATGTGTCTACTTGGCTCGTGATGCTGTACATATCTCGAAACAGTATGCTTTGAAGCATATAATATGCAATGATGACGAATCACTTGGGTTAGTGAAGAAGGAGATATCTGTGATGAAGTTGCTGATAGGACATCCCAATGTGGTCAAACTTCATGCTCATGCCATCTATGATATGGGTAGGACAAAAGAGGCATTCCTTGTAATGGAATTTTGTGAGAAGTCTCTGGTTAGTGTGCTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAAACAGGTTCTTTTAATCTTCAGGGATGTGTGTAATGCAGTCTTCGCTATGCACTGCCAGTCCCCACCTATTGCTCACCGAGACTTGAAAGCAGAGAATCTTTTGTTAAGTTCAGATGGTTTATGGAAGTTGTGTGATTTTGGAAGCATTTCCACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGAATTGAGGAAGATAATATCAGAAAGTACACAACCCCCGCCTACAGAGCTCCTGAGATGTGGGATCTGTTCCTGAAAGAAGTAATTAATGAGAAGGTGGACATATGGGCACTTGGCTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATTTACCTAAATTCAGTTCAACCCTCACAGACTTGATCAGAGACATGCTTCAAGCTAGACCAGATGACCGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATCAATTTAGGTGCTTCAAAGTCTACACAGAAATCAAGTCCAATGCCTCGCAGAAATGCGCCTCCTCCTCCATCAGTTGGAGAACCCAAAACTACCCCTCAGCCATCTCTTGGTCCTAGGGGAGGGGATAGTGGGGGCCAGCTTGGTGCTTTCTGGTCCACTATGCATGCAAAGGATTCACTTGTCCCTGAGGAAAAGGGAAAACCTATGTATGATGAAGAACGATCTAGTCACCATATTTCATCGAAGCATGACAAAGTTCGTCCGGACAATGATCAGTTACCCAAGAATGTTGGCACTAAGAATGTGGCTAACACACAAACTCAGACTGTAAAGAGCAACATACATGGAAAGTTACACAAGCCTGATGCTGCCTCTTCCAAAGACTTTGAAATTAATTTTTTCCCTGATACAGATCATGCAAGTCAGAGACATATGTCAAATCTGGAGAAGAAGAATGATAACTTCCAAGACCAGACTTTTAACACTTTTGTTGCAGAATTTGATACTGCTAAGCTTAACTCCGGGCACGGTAACAAATCCACAAGGGAAGAAGCATTAGAGTCTGAGGTGGAGAAACTCAAAGAGCAGCTGAAGGACACTAACTTAGAGAAATCTGAAATTACTGCTAAGTATGAAAAGCTTACTGCTATCTGCCGTTCACAAAGGCAAGAACTACAGGATCTCAAGCAAGCACTTGCAGCAAGAACTCCATCTCCAAATAGAGAGATTTTGAGAACCTCACCTGGAGTTGCATCACCTGCGTCTTTGCAGGATAGAAGTGAATGGAAAACACCTAGTTCAGAACCAAAGTCATCATGGCAAGCTTTCCCAGAGGCAACTGAATCGTTGAAATCCCTTTCAGCGGACAATGCTTCAAAATCTGTCAGGTCAAGAAATGGTCAGCAGAACAAGCAGGCTACTCAACCAGCTTCTGATTTTGATTCTTGGGGTTTTGGCACAGATACATTTAGTGCTGCTCGTGCTGGTAGTGGTAGCCAACAGATGCCAAGACCTGGTGAAGGGAGTAAAGCTCATGTTTTTGGTGAGGCAAAGGGTTTTGAGAGCAAGTCAAATTCTCAACCTGCTGGATGGGCAGGTTTTTAA 2004 0.4326 MWKFKPFMHKENSGLEGRSIDVGNLKINVHKVIAEGGFSCVYLARDAVHISKQYALKHIICNDDESLGLVKKEISVMKLLIGHPNVVKLHAHAIYDMGRTKEAFLVMEFCEKSLVSVLESRGAGYFDEKQVLLIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLSSDGLWKLCDFGSISTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLKEVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKFSSTLTDLIRDMLQARPDDRPDITQASALLDWPFISINLGASKSTQKSSPMPRRNAPPPPSVGEPKTTPQPSLGPRGGDSGGQLGAFWSTMHAKDSLVPEEKGKPMYDEERSSHHISSKHDKVRPDNDQLPKNVGTKNVANTQTQTVKSNIHGKLHKPDAASSKDFEINFFPDTDHASQRHMSNLEKKNDNFQDQTFNTFVAEFDTAKLNSGHGNKSTREEALESEVEKLKEQLKDTNLEKSEITAKYEKLTAICRSQRQELQDLKQALAARTPSPNREILRTSPGVASPASLQDRSEWKTPSSEPKSSWQAFPEATESLKSLSADNASKSVRSRNGQQNKQATQPASDFDSWGFGTDTFSAARAGSGSQQMPRPGEGSKAHVFGEAKGFESKSNSQPAGWAGF 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00581 667 MobiDBLite consensus disorder prediction 315 329 - -
Trre6g00581 667 FunFam probable serine/threonine-protein kinase DDB_G0280111 10 310 - -
Trre6g00581 667 MobiDBLite consensus disorder prediction 366 400 - -
Trre6g00581 667 MobiDBLite consensus disorder prediction 366 391 - -
Trre6g00581 667 SMART serkin_6 27 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00581 667 MobiDBLite consensus disorder prediction 529 667 - -
Trre6g00581 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Trre6g00581 667 PANTHER SERINE/THREONINE PROTEIN KINASE 1 643 - -
Trre6g00581 667 Coils Coil 476 531 - -
Trre6g00581 667 Pfam Protein kinase domain 29 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00581 667 CDD STKc_GAK_like 26 288 - -
Trre6g00581 667 SUPERFAMILY Protein kinase-like (PK-like) 28 298 IPR011009 -
Trre6g00581 667 MobiDBLite consensus disorder prediction 306 349 - -
Trre6g00581 667 MobiDBLite consensus disorder prediction 540 618 - -
Trre6g00581 667 Gene3D Transferase(Phosphotransferase) domain 1 10 305 - -
Trre6g00581 667 ProSiteProfiles Protein kinase domain profile. 27 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00581 667 MobiDBLite consensus disorder prediction 653 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00581 Trre-Chr6 4400881 4403887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00581 26 286 Miscellaneous Gene Families AT2G34180 30.627 3.24e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Trre6g00581 Pkinase 7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00581 K08853 - gmx:100808507 962.985