Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00574 ATGGCTTCTCTACTTTCACAACCCAATTTCATTTCCTTAACAACTTACAACAACTTCAAACCCAAAACGTCACTCCCTTCTTCCCTCGTCGTTGGAACTTCAACCACACGCCGTTTTAGGAGATATGTAACGGTTTCTGAACAAGCTACTGCCAATTCTCCTGCTGTTAGAAAACTCTATGTTGGGAACATTCCTCGTACTGTCAGTAATGATGAACTTGCTCAGATTGTTCAAGAACATGGTGCTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTTACAATGAAAACCATTGAGGATGCAAATGCAGCAGTTGAGAAACTCAATGGCACTCAAATTGGAGGGCGTGAGATTAAAGTGAATATAACCGAAAAACCTTTAACCACGGGAAGTGTGTCACTCCAGGCTGGGGAGCCTGAATTTGTTGACAGTCCCTACAAGGTATATGTGGGAAATCTGGCTAAGAATGTAACATCTGATACCCTTAAAAGTTTCTTTGAGAAAGGAAAAGCTCTTAGTGCCAAGGTTTCACGGATTCCTGGGACCTCAAAATCCAGCGGTTTCGGTTTTGTCACATTTTCATCAGATGAGGATGTAGAAGCTGCTATCTCATCTTTCAATGATGCTTTGTTAGAAGGTAAAAATATCCGTGTGAATAAGGCGTAG 696 0.4167 MASLLSQPNFISLTTYNNFKPKTSLPSSLVVGTSTTRRFRRYVTVSEQATANSPAVRKLYVGNIPRTVSNDELAQIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTIEDANAAVEKLNGTQIGGREIKVNITEKPLTTGSVSLQAGEPEFVDSPYKVYVGNLAKNVTSDTLKSFFEKGKALSAKVSRIPGTSKSSGFGFVTFSSDEDVEAAISSFNDALLEGKNIRVNKA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00574 231 SMART rrm1_1 157 229 IPR000504 GO:0003723
Trre6g00574 231 SMART rrm1_1 58 131 IPR000504 GO:0003723
Trre6g00574 231 Gene3D - 34 142 IPR012677 -
Trre6g00574 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 231 IPR000504 GO:0003723
Trre6g00574 231 FunFam 30S ribosomal protein 2, chloroplastic 143 231 - -
Trre6g00574 231 SUPERFAMILY RNA-binding domain, RBD 150 231 IPR035979 GO:0003676
Trre6g00574 231 SUPERFAMILY RNA-binding domain, RBD 50 135 IPR035979 GO:0003676
Trre6g00574 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 135 IPR000504 GO:0003723
Trre6g00574 231 PANTHER OS02G0815200 PROTEIN 52 230 - -
Trre6g00574 231 CDD RRM1_PSRP2_like 58 137 - -
Trre6g00574 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 227 IPR000504 GO:0003723
Trre6g00574 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 129 IPR000504 GO:0003723
Trre6g00574 231 Gene3D - 144 231 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00574 Trre-Chr6 4294872 4299550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00574 59 231 Eukaryotic Initiation Factors Gene Family AT3G16380 33.708 1.35e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00574 K13126 - gmx:100811197 298.516