Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00571 ATGAGGAGAAAAAACCAATTATTTCTCCGCCATCGAATCGATTCTTGCAAATCAAAATGCTCAACCGCCGATGAAATCGCCAATCATCTCCGATCATCTTGCACTAAGTACGGCAGAATGAAGGAAAAACAACTGCACAGATTAGTTGAGAATGTTCTTCAAAAAGAAAAACAAGAAGAAAATATATTGTTGCTAAAGAAAGAAGAAACTACTTCACATAACAAATCATCAATGTCATGTGATTCTGTTTTGGTTTCGGATTCCGAGTTCAACAACGGAGGAGAAAATGTGATGAATAATGATGTCAATGTGAGAAATGTAGGGACAAGGTTTAAGGATTTAGGTGGGATGGAAGAGGTAATTGAAGACTTGAAGATCACTATTCTTATGCCAATTTTCAATCCTAAGGTGTGTGAAATGTTAGGTTTGAAGCCAATAAATGGCTTATTGTTGCATGGATTACCTGGTTGTGGGAAAACTAAACTTGCTCATGCTATTGCTTTTGAGACTGGTTTTAATTTCTATCCTACTTCTGCTACTCAACTTGTTTCTGGAATCTCAGGTGCATCGGAAGAAAGTATTAGAGAGCTTTTCGCTCAAGCAAAAAGGAATGCTCCCTCAATTATCTTTATCGACGAGATTGATGCAATTGCGCCAAAAAGAGATGATACACAGCGTCTGATGGAGATACGAATTGTGACACAGTTAATGATTTCTATTGAGAAAGCTAATGATGATTCAGAGGCTTCTGATGAACCTCATCGCCATGTTCTTGTAATTGGAGCAACAAATAAGCCCGATGCTATTGACTCTTCTTTGAGAAGGCCTGGTCGTTTTGATCGTGAGATAACTATTGCTATTCCTGATGAATCTGGCAGGGAGAAGATTCTTACCGTGGTTACTCGCAAACAAAAACATGACAGTTCTGTTGATTTGCGAAAATTAGCCACGTCTACGTCAGGATTTGTTGGTGCTGATTTAGAAGCTCTGGCCAATGAGGCTGGCATTGTGGCAATGAATAGAATAAGTAATGAAATGAAACTTAAATTATCTCAAGATCTCACGAATGAGCCTGATGAAGATTCGTGGAAGAAACCTTTGTTGCCTGATGATGATATAGAGAAATGTGCAATCACAATGTCTGATTTTGAGGAAGCAATCAAAACGGTGCAACCTTCATTAACAAGAGAAGGATTCACTGCCATTCCTAATGTTAAATGGGAAGATGTTGGTGCGCTTGATCATGTAAGAGAGGTGTTTGATCACTACATTCTAAACCGTATAAAACATCCTGGTGATTATGAGAAATTTACGAAGGATCTTGAGATGGGATTTTTACTCTATGGGCCTCCAGGCTGTGGAAAAACACTGATCGCCAAAGCTATTGCCAATCAAGCAGGAGCTAATTTCATTCATGTTAAGGGGCCAGAGCTTTTAACTAAATATGTTGGAGCAAGTGAACAAGAAGTCCGGACAATATTTAGTCGTGCAAGGGCATGTGCACCTTGTATAATTTTCTTTGACGAGGTGGATGCTTTGACACCAAAACGTGATGATGAAAGTGGACAGCGAGTTACTAACGGAGTGGTGACCCAGTTGCTTGCTGTGTGGAATGGTGGAGAAGAGTGCAAAGGTGTTTTCGTAATCGGTGCAACAAATAGACCTGACGCGATAGACGGAGCTCTCTTACGGTCTGGTAGATTTGGTCAACGCCTTGAGGTTCCTCTTCCAAGCCCAGATGGCCGTGTTAATATATTGAAAACACTTGCAAAGGGTAGGCCTATTGATGACAGTGTGGATTTGAGTGTCATTGGAAGAATGAAAGAATGTGAAAACTTTAGTGGCGCTGATCTTGCTGCATTGATGAATGAAGCAGGGATGGCTGCACTCATTGAGAAGTGGAACTCAATCGATGAAAACATTGAAACCATCAAGACATGTCATTTTGAGGTAGCATTTAGTAAAGTATCTCCCTCTGTGTCGAAAAAGCAAAGGGAATACTATAAAGATATTTCAAAATCTTTGAAGCAGTATCAGAATAAGGGGCAGCAATATAGCTAG 2061 0.3993 MRRKNQLFLRHRIDSCKSKCSTADEIANHLRSSCTKYGRMKEKQLHRLVENVLQKEKQEENILLLKKEETTSHNKSSMSCDSVLVSDSEFNNGGENVMNNDVNVRNVGTRFKDLGGMEEVIEDLKITILMPIFNPKVCEMLGLKPINGLLLHGLPGCGKTKLAHAIAFETGFNFYPTSATQLVSGISGASEESIRELFAQAKRNAPSIIFIDEIDAIAPKRDDTQRLMEIRIVTQLMISIEKANDDSEASDEPHRHVLVIGATNKPDAIDSSLRRPGRFDREITIAIPDESGREKILTVVTRKQKHDSSVDLRKLATSTSGFVGADLEALANEAGIVAMNRISNEMKLKLSQDLTNEPDEDSWKKPLLPDDDIEKCAITMSDFEEAIKTVQPSLTREGFTAIPNVKWEDVGALDHVREVFDHYILNRIKHPGDYEKFTKDLEMGFLLYGPPGCGKTLIAKAIANQAGANFIHVKGPELLTKYVGASEQEVRTIFSRARACAPCIIFFDEVDALTPKRDDESGQRVTNGVVTQLLAVWNGGEECKGVFVIGATNRPDAIDGALLRSGRFGQRLEVPLPSPDGRVNILKTLAKGRPIDDSVDLSVIGRMKECENFSGADLAALMNEAGMAALIEKWNSIDENIETIKTCHFEVAFSKVSPSVSKKQREYYKDISKSLKQYQNKGQQYS 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00571 686 Gene3D - 577 654 - -
Trre6g00571 686 PANTHER AAA-FAMILY ATPASE 312 678 - -
Trre6g00571 686 Pfam ATPase family associated with various cellular activities (AAA) 149 285 IPR003959 GO:0005524|GO:0016887
Trre6g00571 686 Pfam ATPase family associated with various cellular activities (AAA) 446 575 IPR003959 GO:0005524|GO:0016887
Trre6g00571 686 Gene3D - 403 668 IPR027417 -
Trre6g00571 686 FunFam Ribosome biogenesis ATPase RIX7 99 286 - -
Trre6g00571 686 Pfam AAA+ lid domain 309 384 IPR041569 -
Trre6g00571 686 Pfam AAA+ lid domain 598 650 IPR041569 -
Trre6g00571 686 Gene3D - 96 286 IPR027417 -
Trre6g00571 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 674 IPR027417 -
Trre6g00571 686 ProSitePatterns AAA-protein family signature. 257 275 IPR003960 GO:0005524|GO:0016887
Trre6g00571 686 SMART AAA_5 145 289 IPR003593 GO:0016887
Trre6g00571 686 SMART AAA_5 441 578 IPR003593 GO:0016887
Trre6g00571 686 Gene3D - 288 397 - -
Trre6g00571 686 ProSitePatterns AAA-protein family signature. 546 564 IPR003960 GO:0005524|GO:0016887
Trre6g00571 686 FunFam ATPase, AAA family protein 403 581 - -
Trre6g00571 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 398 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00571 Trre-Chr6 4263662 4268438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00571 377 659 Calmodulin-binding Proteins AT3G56690 39.789 1.77e-55 202