Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00567 ATGTCATTGTCGAGTGGGGATGATAGTCGCAAAATGCTAAAGTGTAACCGGCCATCATCATCATCAAGTGGAGATGTTGGCTGCAGAAGGATAAAGCGTAGTCAGTCGTCATTATTAGGCGAAGAAGATGATCAAGGACATTACGCGGAAGGAGGAGAAGGCATATCTACTGGAGATGGTCACAAAACGCTAAAGCGTAGTTGGTCATCGTTATCAATTGAGGACGATAGTCACAAAATGCTAAAGCGTAATTGGCCATCATCATCAAGTGGGGATGATGACTGCAAAACGATAAAGCGTAGTGAGTCATCATTATCAGGTGAGGAAGGTGACGATGATGAAGAAGATGATCAAGGAGGTAACTCGGGAGGAGGAGAAGAAGGTAGTCTTAAGAAAGGTACATGGACAGCAGAAGAGGATGAAATTTTGGTAGAACATGTTAAAAAATACGGATTGGGAAATTGGAATGCGGTGCGAAAGTATTCAGGACTTGCTCGCTGTGGTAAAAGCTGTCGTCTACGATGGGCAAATCATTTGAGACCAGAACTGAAAAAGGGTGAATTTACTGATGAAGAAAAAAAGAAAGTCCTTGAGCTCCACTTTTCGATGGGAAACAAATGGGCTCGAATGGCTGCATTGATGCCTGGGCGTACAGATAATGAGATAAAGAACTATTGGAACACGAGAGCTAAGAGACTACGACGAGTTGGCTTACCACTCTACCCTGAAGAGATATCCAAAAATCCGTTAAAGGGTAAACAAGAAAATGCCGACACAAATGAAGCCAGCCAGTGTGATGAAACAGAAAACTTCAATATACCTGATGTGGAATTTAAAGATTACAAATTACACCCAGCTATATTACCGCCATGTTTTGATATTAATACCTTGATCAAGCGTCCCTCAAAGCGCGCTTTTGAGTCCAATATGATATACAGTGATTTGGGCGGTTGTAGCAGTAGTGCTGCTGTCCAAGAAGTATTTGATCCGTGCGGCAAATATCCTATGTTTTCTGCTCCATGTGATCCGATTCTTTACACCAACGCTCCATTTCATGGATATGAATCATATGATAACATTCCGGACGGTATTCACACTGTACCAAATGTCTCTTCTTCTGAGCCCATATACAGGTCCATGAGATATGAATCATATGATAACATTCCGGACGGTATTCACACCGTACCAAATGTCTCTTCGTCTGAGCCCATATTCGGGTCCATGAGGTATGAGCTCCCTTCACTCCAATATTTACAGACTCAACAAGGTAGCTGGTCTGTGTCGCCACTTACTTCACTTGAGTCTGTCGACACAATGATTCACTCTTCTCCTAATGAGCCTTATCAGTCATCTCCGAATGAGCCTTATCAGTCAGTTCCAACTTCTCCAGACAGCAGTCATTTTGTTGATACAATATTACACTCCAATGATGATTCTTTTGAAGAGAAAATTGATAACACCGCGCCCAATGAAGCAGACAATAGTACACAGTGGAATGAACTATATGATCAGTCTGGTGCTTCATTTCTGCCATCTGACTATAATACTCATCACATGAACATGTGGTCAATTGATCCATCCGACTTAGTCGAAACCACTCAAGATCATGGTAATTTGAATCATATAGATTTTGCCTCAGATCCTATGCTCGAATCTGATCAAATTAACACAGGAAGCATGATCAGAATGAGCCTCTTGGTTAGCTATAGGACTATGTCCTTAATGGTGTTTTTTTTAATCATGGTAACATTGGTGGCACAAGTTCAAAGCACACCTTGCTCAAGCACATTTTTCTCAGCACTTGTGCAACTCATTCCTTGTAGGGCAGCTGTTGCACCTTTTAGTCCAATTCCACCAAATGATGCTTGCTGCAATGCCCTTAGGGCCTTAGGCCAACCATGTTTGTGTGTTCTTGTTAATGGCCCTCCAATTTCTGGTGTTGATCGCAACATGGCCTCACAACTCCCTGAAAAATGCACCACAAGCTTTGATCCTTGTGAGATCATATGA 2010 0.4219 MSLSSGDDSRKMLKCNRPSSSSSGDVGCRRIKRSQSSLLGEEDDQGHYAEGGEGISTGDGHKTLKRSWSSLSIEDDSHKMLKRNWPSSSSGDDDCKTIKRSESSLSGEEGDDDEEDDQGGNSGGGEEGSLKKGTWTAEEDEILVEHVKKYGLGNWNAVRKYSGLARCGKSCRLRWANHLRPELKKGEFTDEEKKKVLELHFSMGNKWARMAALMPGRTDNEIKNYWNTRAKRLRRVGLPLYPEEISKNPLKGKQENADTNEASQCDETENFNIPDVEFKDYKLHPAILPPCFDINTLIKRPSKRAFESNMIYSDLGGCSSSAAVQEVFDPCGKYPMFSAPCDPILYTNAPFHGYESYDNIPDGIHTVPNVSSSEPIYRSMRYESYDNIPDGIHTVPNVSSSEPIFGSMRYELPSLQYLQTQQGSWSVSPLTSLESVDTMIHSSPNEPYQSSPNEPYQSVPTSPDSSHFVDTILHSNDDSFEEKIDNTAPNEADNSTQWNELYDQSGASFLPSDYNTHHMNMWSIDPSDLVETTQDHGNLNHIDFASDPMLESDQINTGSMIRMSLLVSYRTMSLMVFFLIMVTLVAQVQSTPCSSTFFSALVQLIPCRAAVAPFSPIPPNDACCNALRALGQPCLCVLVNGPPISGVDRNMASQLPEKCTTSFDPCEII 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00567 669 Pfam Probable lipid transfer 587 664 IPR016140 -
Trre6g00567 669 SUPERFAMILY Homeodomain-like 130 226 IPR009057 -
Trre6g00567 669 CDD SANT 187 228 IPR001005 -
Trre6g00567 669 CDD SANT 134 179 IPR001005 -
Trre6g00567 669 ProSiteProfiles Myb-like domain profile. 127 179 IPR001005 -
Trre6g00567 669 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 234 IPR017930 -
Trre6g00567 669 SMART sant 131 181 IPR001005 -
Trre6g00567 669 SMART sant 184 232 IPR001005 -
Trre6g00567 669 MobiDBLite consensus disorder prediction 75 134 - -
Trre6g00567 669 Pfam Myb-like DNA-binding domain 132 179 IPR001005 -
Trre6g00567 669 Pfam Myb-like DNA-binding domain 185 228 IPR001005 -
Trre6g00567 669 FunFam MYB-related transcription factor 131 184 - -
Trre6g00567 669 MobiDBLite consensus disorder prediction 1 63 - -
Trre6g00567 669 ProSiteProfiles Myb-like domain profile. 180 230 IPR001005 -
Trre6g00567 669 MobiDBLite consensus disorder prediction 35 49 - -
Trre6g00567 669 Gene3D - 593 666 IPR036312 -
Trre6g00567 669 Gene3D - 129 185 - -
Trre6g00567 669 MobiDBLite consensus disorder prediction 107 121 - -
Trre6g00567 669 Gene3D - 187 233 - -
Trre6g00567 669 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 183 IPR017930 -
Trre6g00567 669 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 114 530 - -
Trre6g00567 669 MobiDBLite consensus disorder prediction 440 465 - -
Trre6g00567 669 MobiDBLite consensus disorder prediction 1 30 - -
Trre6g00567 669 CDD nsLTP_like 607 659 IPR044741 -
Trre6g00567 669 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 601 666 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00567 Trre-Chr6 4247351 4251085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00567 125 488 MYB Transcription Factor Family AT3G11440 37.626 6.40e-63 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g00567 LTP_2 1.9e-06 CL0482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00567 K09422 - gmx:100800658 346.665