Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00566 ATGAGTATGAAAAACAAAATCATGTTTGATTATGATGCTAAGAGAAGCCAAGAGCTTCAACGTGGTTCCAACAACAACCCAAAAAAGCATGCCATAATAACAAAACACATCCCTAGTGCATCTCATGTTCTTGAGATCACTTCTGGAGCTGATGTGTCAAAATGTCTATTTGATTATGTTTATCGCCGAGGGAGGGGCATCTCCATCCTCAGTGGAAATGGAGAGGTCGCTAATGTCACCCTTCGTCAGCTCACAGGGAGAATTGAAACCTTTGTGGGAAGGTTCAATATTCTTTCAATATCTGGGACAATTTTCCCACCGATGACACCAGTAAGTGCGAGAGGATTAGAAGTTTGCTTAGCAAGCACTACAGGACAAATGATATGTGGTAATGTTATGCCCCCTCTAGTGGCTTCGGGTCTAGTGGTGTTGGTGGTTGTTTCCTTTGCAAACACTGCAAATGAACAGGTGGAAGAAGGTGATGCTGGCTTGTTCAATGTTGGAGGATCAACATCTGGAATGAGTAACATCATCAAATTTCCCTCCCGCCTCTAG 555 0.4324 MSMKNKIMFDYDAKRSQELQRGSNNNPKKHAIITKHIPSASHVLEITSGADVSKCLFDYVYRRGRGISILSGNGEVANVTLRQLTGRIETFVGRFNILSISGTIFPPMTPVSARGLEVCLASTTGQMICGNVMPPLVASGLVVLVVVSFANTANEQVEEGDAGLFNVGGSTSGMSNIIKFPSRL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00566 184 Pfam Plants and Prokaryotes Conserved (PCC) domain 41 150 IPR005175 -
Trre6g00566 184 SUPERFAMILY AF0104/ALDC/Ptd012-like 41 164 - -
Trre6g00566 184 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 158 IPR014476 GO:0003680
Trre6g00566 184 Gene3D - 41 167 - -
Trre6g00566 184 ProSiteProfiles PPC domain profile profile. 36 170 IPR005175 -
Trre6g00566 184 CDD DUF296 42 139 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00566 Trre-Chr6 4241739 4242293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00566 13 157 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 46.203 1.19e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00566 - - tpra:123911212 239.58