Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00564 ATGAGTATTATGTATGAAGAGCTAAGAAGAAACCAAGAAATGGATTCTTCAAGTATTATTCATTCAAAACAACACTATCATCAACAACATAATTCTGGACTACTTATGAGGTACAATTCAGCTCCAACCTCATTGCTTACAAGCCTTATTGACAACAACACTCAAAGCTATCTAAACAATGAAGAATCTTTTACAAGTGAGAGTTCAAGTTCAGAAATGGATACTATGTTGTCTAGGATGATATCATCCAATAATGGATGGAACAATTCTGAAGAACCTTTGCAAGAATTTGATGTGAAGCCTGTGAAGCAAGAAATAGGTGAATCTGTTCCACAGAATGGTGATTATTCTTATGGTGGATCTGATTTGATTTACCAAGGCTTTTCAAATGGTTCTAGTAATGGATTTTATGGATCTTTTGATGGAGTTAGCTCTAAAATTGGTGTGAGGAATTCTTCTTCCAATCTAATTAGGCAAAAGAGCTCACCTGCTGGATTTTACTCTAATGAAAATGGTCTTGCAACATTGAGAGAATTAGGAAGCTTTAAAGCCAATGAAGTCTCAAATGGTACACTTAACTTCTCATCTAGGCCATCTACTTGCTTGAAAAGGATGCCACAAATAGCTGAAAATGGAATCCAAAGCCTAGAAGCAAATTGTGATCAAACTACAAACCTAGTTAATGAAAATGGTAGCTCCAAAAGTCACATTCCAAGGTTCACCAATGAATTTTGGGACAATTCTGCATTCAATGCTCAAAAAACAGAAATTGAAGATGAAATAATGTTTTCTACTTCAAATGGTTTGGAATCCCAAGAAGCGGATTTTTGCTATCAAAATCTTGGATTGACTCATCATTTGAGTTTGCCTAGTTCATCTACAAAGATATCATCCATGGAGAAGTTTCTTCAAGTTCAAGGAACAGTTCCTTGTAAAATTCGAGCGAAAAGAGGCTTTGCAACTCATCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACGCGAATAAGTGAAAGAATCAAGAAACTGGAAAGTCTTTTTCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGATTACATTAAAGACTTGCAAGAACAAGTTCAGATACTCACAGTTCGTAAGGAAAAATGCAAATGTACAAGTCATGAATTTTTGTGTATATATTAA 1185 0.3527 MSIMYEELRRNQEMDSSSIIHSKQHYHQQHNSGLLMRYNSAPTSLLTSLIDNNTQSYLNNEESFTSESSSSEMDTMLSRMISSNNGWNNSEEPLQEFDVKPVKQEIGESVPQNGDYSYGGSDLIYQGFSNGSSNGFYGSFDGVSSKIGVRNSSSNLIRQKSSPAGFYSNENGLATLRELGSFKANEVSNGTLNFSSRPSTCLKRMPQIAENGIQSLEANCDQTTNLVNENGSSKSHIPRFTNEFWDNSAFNAQKTEIEDEIMFSTSNGLESQEADFCYQNLGLTHHLSLPSSSTKISSMEKFLQVQGTVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLESLFPKSDKQTSTADMLDLAVDYIKDLQEQVQILTVRKEKCKCTSHEFLCIY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00564 394 Gene3D - 321 389 IPR036638 GO:0046983
Trre6g00564 394 CDD bHLH_AtbHLH_like 324 376 IPR045239 -
Trre6g00564 394 FunFam Transcription factor bHLH130 family 320 388 - -
Trre6g00564 394 SMART finulus 325 375 IPR011598 GO:0046983
Trre6g00564 394 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 383 - -
Trre6g00564 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 369 IPR011598 GO:0046983
Trre6g00564 394 Coils Coil 366 386 - -
Trre6g00564 394 Pfam Helix-loop-helix DNA-binding domain 325 370 IPR011598 GO:0046983
Trre6g00564 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 388 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00564 Trre-Chr6 4219242 4221487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00564 20 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 35.325 1.41e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g00564 HLH 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00564 - - gmx:100812802 478.018