Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00558 ATGGCTCAGAGAACTGAAAACGAAGAAACAGAATTCAAAGTTGTACCTGAAACCATAACGCTCTGTATCAACAACTGTGGCGTAATCGGTAACGCTTCAACGAACAACATGTGTCAAAATTGTTTCACGGCGTCAACGGCAACAACCACCACCGTCAGAATCGGAAACAAAATTTCGTCCAAATCTGTTCGTTCTCCGAAGAGATCTCTACCGGAGGAATCATCGTCGATTGTTACCGATCGGAATTCGTCAGATCAAGCGACGTTTTCCGAGGCGAAGCGTTTTGTAAGTCGATGCTCTGGTTGTCGGAAAAAGGTAGGGTTGACCGGATTCCGATGTAGATGCGGTGATCTTTTCTGTTCGGAACATCGGTACTCCGATCGTCATGATTGTAGCTATGATTACAAAGCTGCTGGAAGAGAAGCGATTGCGAAGGAGAATCCTGTTATCAGAGCCGCGAAAATCGTTAAGGTCTGA 477 0.457 MAQRTENEETEFKVVPETITLCINNCGVIGNASTNNMCQNCFTASTATTTTVRIGNKISSKSVRSPKRSLPEESSSIVTDRNSSDQATFSEAKRFVSRCSGCRKKVGLTGFRCRCGDLFCSEHRYSDRHDCSYDYKAAGREAIAKENPVIRAAKIVKV 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00558 158 MobiDBLite consensus disorder prediction 60 83 - -
Trre6g00558 158 Pfam AN1-like Zinc finger 99 136 IPR000058 GO:0008270
Trre6g00558 158 SMART AN1_Zf_4 99 136 IPR000058 GO:0008270
Trre6g00558 158 PANTHER AN1-TYPE ZINC FINGER PROTEIN 19 157 - -
Trre6g00558 158 SUPERFAMILY AN1-like Zinc finger 82 152 IPR035896 -
Trre6g00558 158 FunFam Zinc finger AN1-type containing 6 72 154 - -
Trre6g00558 158 ProSiteProfiles Zinc finger AN1-type profile. 93 139 IPR000058 GO:0008270
Trre6g00558 158 Gene3D - 75 154 IPR035896 -
Trre6g00558 158 Gene3D - 1 74 - -
Trre6g00558 158 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 65 - -
Trre6g00558 158 Pfam A20-like zinc finger 21 42 IPR002653 GO:0003677|GO:0008270
Trre6g00558 158 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 1 71 - -
Trre6g00558 158 ProSiteProfiles Zinc finger A20-type profile. 16 50 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00558 Trre-Chr6 4154446 4154922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00558 16 158 C2H2 Transcription Factor Family AT3G52800 38.323 1.07e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00558 - - vum:124827556 222.631