Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00555 ATGTCCACCAGGGTTTGCAAGTTCTATGCCAGAGGGATATGTTTGAAAGGGGAGCAATGTGATTTTTCTCATCAAAGAAACGATACTCCAGTTGATGTTTGCTCTTATTATCAGAAAGGGTCTTGTGCTTATGGTAGTCGATGCAGATATAAGCATGTCAGAGCTTCTCAAGCATCATCTTCTGCGTCTATGGTTTCAGATTCTGCTAAAGTAGCATCAAATTGGGTACCTAAGGTTACTAAGGCTCCTGCATCTGACAAGCGTGGTGTAAGGAATTTACAGCGCAAGCATCAGGACTCTAGTGATGTTGGTGAATCCAGTACTGCAAGTGCTAGGCTGCATGATATATTTTGTACATTTGCTGCGGCCAACTGCCCCTTTGGAGATGGATGTTCTCGTGTTCACGGAAATCAATGCTTGTACTGTAGAAAATATTGCTTGCATCCGACTGATAAAAAGGAAAAGGAGAGTCATTTGAGGACTTGTGACAAGAAGGAAAAGTACCTTCTGGCTTTGAAAAATAGTGAAGAAATAGAATGCAATGTTTGTCTGGAGCGTGTCCTTTCCAAACCCAAACCATCAGAATGTAAGTTTGGTTTGCTTCCAGAATGCGATCATGCTTTCTGCTTGTCATGTATCCGCAATTGGCGTAATAGTGCCCCAAACTCTGGAATGGAAATCAGTAGTAATTCCAATACTGTGAGAACCTGTCCTGTTTGCCGCAAACTATCGTATTTTGTCATTCCAAGTGGTATTTGGTTTACTACAAAGGAAGAAAAACAGGAAATTATTGATAACTACAAGGCAAACTGCAGATTGATTGATTGCAAACATTTTGACTCTGGAAATGGGAATTGTCCATTTGGAGCTAGTTGTTTCTATAAGCATACAGTGAAGCCTGGGTCATACACATGGGTACACCGCAGGCCACCACCTCAACGTAGACCAAACAATTATGATATGTATGATGTGTTGGATATGCTCAGTGAAGTTGATTTAACAAGTGGAGAATTTTATAACATCATGAGAGACTCCGAGTTTTTTGATGGGATGGATCCATTTGAATTGATGGCTTTGTCAGATTCGCTGGCTGCTGGTTCGGGTCCTTGTTTGGGTCCTTTTGATTCTGACGACGAGGATAATGAATATAATGTTTTTCGAATGGCTGCTATGTCAGAGGCCCTGGCTTCTGGGGTAGATGATTTTGGCCCTGATGATTTCGATGATGAATTTGATCCTATGGATGCAGCCTTGTTAACAATGATGATGCATTCTCATATCGAAGACGACGATGAAGACGTTGAAGACGATGAAGAAGAATACAGTGACGATGAGTATTAG 1341 0.4139 MSTRVCKFYARGICLKGEQCDFSHQRNDTPVDVCSYYQKGSCAYGSRCRYKHVRASQASSSASMVSDSAKVASNWVPKVTKAPASDKRGVRNLQRKHQDSSDVGESSTASARLHDIFCTFAAANCPFGDGCSRVHGNQCLYCRKYCLHPTDKKEKESHLRTCDKKEKYLLALKNSEEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSCIRNWRNSAPNSGMEISSNSNTVRTCPVCRKLSYFVIPSGIWFTTKEEKQEIIDNYKANCRLIDCKHFDSGNGNCPFGASCFYKHTVKPGSYTWVHRRPPPQRRPNNYDMYDVLDMLSEVDLTSGEFYNIMRDSEFFDGMDPFELMALSDSLAAGSGPCLGPFDSDDEDNEYNVFRMAAMSEALASGVDDFGPDDFDDEFDPMDAALLTMMMHSHIEDDDEDVEDDEEEYSDDEY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00555 446 ProSiteProfiles Zinc finger C3H1-type profile. 270 299 IPR000571 GO:0046872
Trre6g00555 446 MobiDBLite consensus disorder prediction 82 106 - -
Trre6g00555 446 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Trre6g00555 446 MobiDBLite consensus disorder prediction 84 102 - -
Trre6g00555 446 SUPERFAMILY RING/U-box 170 247 - -
Trre6g00555 446 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Trre6g00555 446 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Trre6g00555 446 SMART c3hfinal6 270 298 IPR000571 GO:0046872
Trre6g00555 446 SMART c3hfinal6 112 137 IPR000571 GO:0046872
Trre6g00555 446 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Trre6g00555 446 MobiDBLite consensus disorder prediction 429 446 - -
Trre6g00555 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 252 IPR013083 -
Trre6g00555 446 ProSitePatterns Zinc finger RING-type signature. 204 213 IPR017907 -
Trre6g00555 446 MobiDBLite consensus disorder prediction 425 446 - -
Trre6g00555 446 Pfam CCCH-type zinc finger 33 52 IPR041367 -
Trre6g00555 446 SUPERFAMILY CCCH zinc finger 29 52 IPR036855 GO:0046872
Trre6g00555 446 CDD RING-HC_MKRN 178 241 - -
Trre6g00555 446 PANTHER MAKORIN-RELATED 1 317 IPR045072 GO:0000209|GO:0061630
Trre6g00555 446 ProSiteProfiles Zinc finger RING-type profile. 180 241 IPR001841 -
Trre6g00555 446 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Trre6g00555 446 Pfam RNA-binding, Nab2-type zinc finger 275 296 - -
Trre6g00555 446 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Trre6g00555 446 Pfam RNA-binding, Nab2-type zinc finger 118 136 - -
Trre6g00555 446 Gene3D - 1 69 - -
Trre6g00555 446 SMART ring_2 180 240 IPR001841 -
Trre6g00555 446 Pfam Zinc finger, C3HC4 type (RING finger) 180 240 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00555 Trre-Chr6 4117718 4122676 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre6g00555 zf-C3HC4 9.3e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00555 K15687 - gmx:100788886 637.491