Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00540 ATGCAAATGAGGAAACCTGATTTGATTATTGCAAAAGACAACAACAAAATGAACAACAATGTTAACAAGAGCAAGCTAAGGAAAGGGTTATGGTCACCTGAGGAAGATGAGAAATTGATAAGGTACATGATAACTAAAGGACAAGGTTGTTGGAGTGACATTGCTAGGAATGCAGGTCTTCAAAGGTGTGGCAAAAGTTGTCGTCTTCGATGGATTAATTACTTGAGACCCGATCTTAAACGCGGCGCATTTTCGCCTCAAGAAGAAGAACTCATCATTCATTTCCATTCTATTCTTGGCAACAGATGGTCTCAGATTGCAGCACGTCTCCCTGGTCGGACCGACAATGAAATAAAGAATTTTTGGAATTCTACATTGAAGAAAAGATTGAAAACCAACAATAACTCCACTACATCCCCAAACAATAGCGACTCATCAGATCAACCCATATTAGATGTTTTTGATATGAAAAATAATGTGATCATGCCAATTGATGATCAAGAACTCATGACATTGTGCATGGACTCCTCCTCATCAACTTCATCATCATCCATGCAATCCATGCACATGCATGCCATGGTTTTAGCTGACCAATTTGATCCATTTTCCTTGTTGTCTAATAATCGTTATGACATGACAACAAGTTTCCATGATCATGACATGCCAACAAGCTTAACACAACAAGTTAGCATGGTTGATGATATTGGGCTTCATAGTGATGATTATGGAATTTTGGATGGTAATAAATTGGGGTTATTAGAAAATGATTTTGAACTTCCTCCACTAGAAAGTAGAATTAGCATTGAAAACAAGAGTGCTCCAATTGATCATAATGTGAAAAGCCATATCAACCACTTCAATAATACTTGCTTCAATAACACTAATCACATTCAAAATTCAAATGTAGAGGACTTGTTTGGGTTTGGAAATCATGGCCAAGGGGAAAATTTAAGAATGGGAGAATGGGACATAGAGGGTTTGATGCAAGATATATCCTATTTACCTCCCCTTGATTTTCAAGTTTAA 1026 0.3713 MQMRKPDLIIAKDNNKMNNNVNKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNNNSTTSPNNSDSSDQPILDVFDMKNNVIMPIDDQELMTLCMDSSSSTSSSSMQSMHMHAMVLADQFDPFSLLSNNRYDMTTSFHDHDMPTSLTQQVSMVDDIGLHSDDYGILDGNKLGLLENDFELPPLESRISIENKSAPIDHNVKSHINHFNNTCFNNTNHIQNSNVEDLFGFGNHGQGENLRMGEWDIEGLMQDISYLPPLDFQV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00540 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Trre6g00540 341 SUPERFAMILY Homeodomain-like 26 122 IPR009057 -
Trre6g00540 341 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Trre6g00540 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 75 IPR017930 -
Trre6g00540 341 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Trre6g00540 341 CDD SANT 83 126 IPR001005 -
Trre6g00540 341 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Trre6g00540 341 Pfam Myb-like DNA-binding domain 81 125 IPR001005 -
Trre6g00540 341 Gene3D - 82 151 - -
Trre6g00540 341 FunFam Transcription factor MYB46 82 151 - -
Trre6g00540 341 Gene3D - 25 81 - -
Trre6g00540 341 PANTHER MYB DOMAIN PROTEIN 55 20 280 - -
Trre6g00540 341 FunFam MYB transcription factor 25 81 - -
Trre6g00540 341 CDD SANT 31 75 IPR001005 -
Trre6g00540 341 SMART sant 27 77 IPR001005 -
Trre6g00540 341 SMART sant 80 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00540 Trre-Chr6 4024159 4026800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00540 1 341 MYB Transcription Factor Family AT3G08500 47.326 6.94e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g00540 Myb_DNA-binding 5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00540 K09422 - gmx:100813660 422.55