Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00533 ATGGCAGCACTGCGAGACATTTCTGCAACCTTGCTTTCTCACTCAAAACTCCACACTTCTCTTTTTCAACGTCTCTTCGTTTGTAGAATGACTTCCAAGATTTTTGTTAAAGGTTTAGCATTTTCTACTACAGAAGAGAAATTAGCGGAAGCTTTTTCTCAATACGGAAATGTTCTCAAAGCTGATGTAGTATTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTGCTGAGGAGGAAGGAGCCCTTAAGGCACAGATCGGCATGAATGGAAAGATATTACACGGACGTGTCTTATATGTAGACATAGATCCAGCTAACAAGGAGAAGAAAACTTAG 351 0.3903 MAALRDISATLLSHSKLHTSLFQRLFVCRMTSKIFVKGLAFSTTEEKLAEAFSQYGNVLKADVVLNKAKNRSKGFGYVTFAEEEGALKAQIGMNGKILHGRVLYVDIDPANKEKKT 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00533 116 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 103 IPR000504 GO:0003723
Trre6g00533 116 Gene3D - 27 116 IPR012677 -
Trre6g00533 116 SMART rrm1_1 33 106 IPR000504 GO:0003723
Trre6g00533 116 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Trre6g00533 116 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 107 - -
Trre6g00533 116 SUPERFAMILY RNA-binding domain, RBD 32 111 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00533 Trre-Chr6 3949333 3950997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00533 32 115 Eukaryotic Initiation Factors Gene Family AT1G71770 39.286 1.66e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00533 - K13195 gmx:100527061 150.984