Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00532 ATGTGCGGTGGTCCTGACAAATCAAAATCTCTTTCAACTTCATCATCTCCATCATCATCTTCTGTAGAAGTTTCAAACAACGTCAAAGACATGAAAAATCTAACTGTTCGTACTGATGATTCTTTTTCCAGCTTACTTGAATTTGCTTCTAACAATGATTTTGAAGAATTTAAGGTAGCTTTAGATAGTGATGCTTCACTTATTAACGAAGTTGGCCTTTGGTATGTCCGTCAAAATGGATCTAAACAAATTGTTCTTGAGCACAGAACCCCGTTAATGGTGGCTGCTTCCTATGGGAGTATTGATATTCTAAAGCTTATACTCTCATGTCCAGAAGCTGATGTTAATTTCTCCTGTGGGACCGATAAAGGCACTGCTCTTCACTGTGCTGCTTCAGGGGGTTCTGTTAATGCAGTTGATGCTGTAAAACTGCTTTTATCAGCTGGTGCTGATATCAATTGTGTGGATGCTAATGGAAACCGTCCAGTTGATGTTATTGTTGTTCCTCCTAAGCTTGGTGGTGTGAAAACAATTCTTGAAGAACTTCTCTCAGACAGTGCTTCTGATGGGTCTGTTGATGATTGCTCTCTTCCAGCATCTGTTAATTCATCAAGTCCTCGTTCAGCTGCTCCTTTTTCATCAAATGAAAATGGGTCTCCATCCTCTCCCGGTGCTACTCCTAAGTTTACCGACACAGCTGCCAATTTTACATCAGAAAAGAAAGAGTATCCAATTGATCCATCACTTCCTGATATAAAAAACAGCATATATGCCACAGATGAATTCCGCATGTTTTCGTTCAAGGTTCGTCCTTGTTCTCGGGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGAAGGAGAGACCCCAGAAAGTTTCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGGCTTGCAGACGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGTTGCACCCAGCTCAGTATAGGACAAGGCTCTGCAAAGATGGTACTAGTTGTAACCGAAGGGTGTGCTTTTTTGCTCACATAGCTGAAGAGCTTCGTCCGTTGTATGTGTCCACTGGATCTGCTGTTCCTTCACCTCGATCAGCTGCTTCTGCTGCTAATGTCATGGACATGGCTGCTGCAATGAGCCTTTTTCCTGGTTCACCATCATCAATCTCGTCCATGTCCCCATCTCCCTTTGCACAACCATTATCTCCATCTGCTAGTGGCATCTCTCACTCAAATAATGCTTGGCCACAGCCAAATGTGCCTGCTCTCCATTTACCAGGAAGCAATATTCAAACTAGTCGTTTGAGATCTTCTCTTAGTGCCCGTGATATGCCACTTGATGACTTCAACAATATGTTGCAAGACTTCGATGGTCAACAGCACATACTAAATGACTTGAGCTGTTTCTCACAGCCCCGTCCTGGTGCTATTTCTGTGAGTCGATCTGGTCGGTCTAAAACACTAACTCCATCAAATCTTGAAGATCTATTTTGTGCTGAAATTTCATCTTCTCCTCGGTATTCTGACCCAGCAGCGGCTTCTGTATTTTCCCCAACACACAAATCTGCCGTCTTCAACCAGTTTCAACAGCTTCAAAGTTCTTTATCACCTATTAATACAAATGTCATGTCTCCTAAGAATGTAGAGCATCCTCTATTCCACCAGGCTTCATATGGTGTCTCTTCTCCTGGGAGGATGTCACCAAGAAGTATGGAACCCCTCTCTCCAATGAATTCTCGATTGTCAGCATTTGCTCAGCGTGAGATGCAGCAACAACAGATGCGGAGCCTTAGTTCAAGAGAACTTGGTGCTAACAATCCTGTCTCGGCTGTTGGGTCCCCTGGTAACTCCTGGTCCAAGTGGGGATCCCCTACTGGAAAAGCAGATTGGTCGGTGAATGGACATGAGTTTGGACGTTCGCCAAGATCTACCCCTTTTGAACATGGAAACAATGGGCAGGAGCCTGATCTATCTTGGGTTCATTCCCTTGTCAAGGAATCCCCACCTGAGATAAAAGAGAAGCTGGCTGGTTCTGGTCCAATTGCATCTGCTGAACCAAATTCCAATCCTCAAGTGGAGTCTATTGATCATTCAGTTTTAGGAGCTTGGCTCGAGCAAATGCAGCTGGATCAACTTGTAGTCTAG 2184 0.4405 MCGGPDKSKSLSTSSSPSSSSVEVSNNVKDMKNLTVRTDDSFSSLLEFASNNDFEEFKVALDSDASLINEVGLWYVRQNGSKQIVLEHRTPLMVAASYGSIDILKLILSCPEADVNFSCGTDKGTALHCAASGGSVNAVDAVKLLLSAGADINCVDANGNRPVDVIVVPPKLGGVKTILEELLSDSASDGSVDDCSLPASVNSSSPRSAAPFSSNENGSPSSPGATPKFTDTAANFTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHIAEELRPLYVSTGSAVPSPRSAASAANVMDMAAAMSLFPGSPSSISSMSPSPFAQPLSPSASGISHSNNAWPQPNVPALHLPGSNIQTSRLRSSLSARDMPLDDFNNMLQDFDGQQHILNDLSCFSQPRPGAISVSRSGRSKTLTPSNLEDLFCAEISSSPRYSDPAAASVFSPTHKSAVFNQFQQLQSSLSPINTNVMSPKNVEHPLFHQASYGVSSPGRMSPRSMEPLSPMNSRLSAFAQREMQQQQMRSLSSRELGANNPVSAVGSPGNSWSKWGSPTGKADWSVNGHEFGRSPRSTPFEHGNNGQEPDLSWVHSLVKESPPEIKEKLAGSGPIASAEPNSNPQVESIDHSVLGAWLEQMQLDQLVV 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00532 727 MobiDBLite consensus disorder prediction 187 231 - -
Trre6g00532 727 Gene3D - 6 205 IPR036770 -
Trre6g00532 727 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 326 IPR000571 GO:0046872
Trre6g00532 727 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Trre6g00532 727 ProSiteProfiles Zinc finger C3H1-type profile. 306 328 IPR000571 GO:0046872
Trre6g00532 727 SMART ANK_2a 122 154 IPR002110 GO:0005515
Trre6g00532 727 SMART ANK_2a 87 117 IPR002110 GO:0005515
Trre6g00532 727 Pfam Ankyrin repeats (3 copies) 79 156 IPR002110 GO:0005515
Trre6g00532 727 PANTHER UNKEMPT FAMILY MEMBER 47 680 IPR045234 -
Trre6g00532 727 MobiDBLite consensus disorder prediction 612 636 - -
Trre6g00532 727 Gene3D - 301 364 - -
Trre6g00532 727 FunFam Zinc finger CCCH domain-containing protein 66 259 327 - -
Trre6g00532 727 MobiDBLite consensus disorder prediction 1 26 - -
Trre6g00532 727 PRINTS Ankyrin repeat signature 141 155 IPR002110 GO:0005515
Trre6g00532 727 PRINTS Ankyrin repeat signature 88 103 IPR002110 GO:0005515
Trre6g00532 727 MobiDBLite consensus disorder prediction 7 26 - -
Trre6g00532 727 MobiDBLite consensus disorder prediction 685 705 - -
Trre6g00532 727 SMART c3hfinal6 301 327 IPR000571 GO:0046872
Trre6g00532 727 SMART c3hfinal6 336 359 IPR000571 GO:0046872
Trre6g00532 727 SUPERFAMILY Ankyrin repeat 34 167 IPR036770 -
Trre6g00532 727 MobiDBLite consensus disorder prediction 650 669 - -
Trre6g00532 727 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Trre6g00532 727 MobiDBLite consensus disorder prediction 189 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00532 Trre-Chr6 3944147 3946330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00532 1 724 C2H2 Transcription Factor Family AT5G12850 52.973 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre6g00532 Ank_2 1.2e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00532 - - gmx:100792574 1136.71