Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre6g00520 | ATGGATGATTACTATTGTAAGGCATGGTTACGTTTCTCAGGTTCCAACAGACAAACTATTTCATGTGATGCCAATTACAAGTATTTCAACATTCAATTTGATTACAAAACCATGTTTGTCCCAACTAATCATACAATGCTTCAATCTTCTTTCGGAGACATTCAACGTTACACTCTTCGTAACGTCTCAATGGATAGGATAATGGGTGAAAATACTTTTGTGTCGTGGTTTTCTCAAATAAACATTCCTCAAGATGCTTTTACATTGGTGCAAGAAGAAATCATGCAATGTGCTTCTGATATAGTTCATGATGAGACTTATAAGAACAGAAAGTGTTTTACTATACGAGTCGAGTTTTCTGTTACAAGGACTATTGAAATTGAAAGTGATGAAGATGATTATGATTTGGAAGAGGATGAAGACCTAATGATGATTGAAGAAGAAACTACGAGTTTTATTCCTGCGGCTAAATCGTGTCTTGAAGAATTGAAGATGGTAAAAGCAGAAGAAATAACAAAATGTACCATTTGTTTTGAAGATGTTAACGTTGGTGTTTCACTTCCATGTTCCCATATGTTTCATATGAATTGCATTCAAGATTGGTTGGTGATAGGTCATTGTTGCCCTTTGTGTAGGTTTCAATTGCCTATGAGTGAATAA | 660 | 0.347 | MDDYYCKAWLRFSGSNRQTISCDANYKYFNIQFDYKTMFVPTNHTMLQSSFGDIQRYTLRNVSMDRIMGENTFVSWFSQINIPQDAFTLVQEEIMQCASDIVHDETYKNRKCFTIRVEFSVTRTIEIESDEDDYDLEEDEDLMMIEEETTSFIPAAKSCLEELKMVKAEEITKCTICFEDVNVGVSLPCSHMFHMNCIQDWLVIGHCCPLCRFQLPMSE | 219 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre6g00520 | 219 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 113 | 216 | - | - | |
Trre6g00520 | 219 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 219 | IPR013083 | - | |
Trre6g00520 | 219 | SUPERFAMILY | RING/U-box | 173 | 217 | - | - | |
Trre6g00520 | 219 | ProSiteProfiles | Zinc finger RING-type profile. | 174 | 212 | IPR001841 | - | |
Trre6g00520 | 219 | SMART | ring_2 | 174 | 211 | IPR001841 | - | |
Trre6g00520 | 219 | Pfam | Ring finger domain | 173 | 212 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre6g00520 | Trre-Chr6 | 3771916 | 3772575 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre6g00520 | 126 | 216 | C3H Transcription Factor Family | AT5G60820 | 37.037 | 4.09e-12 | 62.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre6g00520 | - | - | tpra:123917079 | 272.707 |