Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00507 ATGGAAGCCGCAGTTATCGACGCCGGTTCCAGCCTCCTCAAAGCCGGTTTTGCAATTCCCGATCAAACTCCCGCCATGATAATTCCTAGTCAGATGAAACGAATGGTTGATGATAAGGGATCAGCGGATGATAATGGTAATGGTAATGGTCAGTTAGTGGTGGATGATGTTTCTGTTGAACCGGTGGTTCGAGGTTATGTTAGAGATTGGGATGCTATGGAGGATTTGTTGAATTATGTTTTGTATTCTGGTCTTGGATGGGAAATTGGTAATGAAGGACAAATACTCTTTACGGATCCACTTTGTACCCCAAAGGCTAACAAAGAACAGCTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCATCGGAACAGGCAGTGCTGTCGCTCTATGCTGTGGGAAGGATCTCTGGATGCACAGTTGATATTGGTCATGGAAAAATAGATATTGCTCCAGTAATTGAGGGTGCTGTTAACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTACTGATCTAACTAATTTCCTGGCTCAAGAACTTGGCAAATCCAATCCACTAGTGAATATCAGCATGTCGGATGTTGAGAAAATAAAACAGCAATACTCATGTTGTGCTGAAGATGACTTAGCTTATCAGAAGACCGAAGATTCTTGTCCTGTGGAGACACACATCCTTCCTGATGGACAGGTGATAACAATTGGAAGAGAAAGATATACAGTTGGTGAAGCTTTGTTCCAGCCAAGCCTATTGGGTTTAGAGTCCCATGGCATTGTAGAGCAGCTTGTCCGTACTATTTCAACTGTGACATCTGATAATCACCGGCAACTTCTGGAAAATACTGTGGTTTGTGGTGGCACTTCTTCCATGACCGGATTTGAAGAGAGATTTCAGAAGGAATCTTTGCTAAGTTCATCTGCTGTTCGACCTACCTTGGTTAAGCCTCCAGAATATATGCCGGAAAATTTAACTACATATTCTGCATGGGTCGGAGGTGCCATACTTGCCAAAGTAGTTTTTCCTCAAAATCAGCATGTAACTAAGGCAGACTATGATGAAAATGGGCCTTCCATTGTTCACCGGAAATGCTTCTGA 1107 0.4255 MEAAVIDAGSSLLKAGFAIPDQTPAMIIPSQMKRMVDDKGSADDNGNGNGQLVVDDVSVEPVVRGYVRDWDAMEDLLNYVLYSGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGTDLTNFLAQELGKSNPLVNISMSDVEKIKQQYSCCAEDDLAYQKTEDSCPVETHILPDGQVITIGRERYTVGEALFQPSLLGLESHGIVEQLVRTISTVTSDNHRQLLENTVVCGGTSSMTGFEERFQKESLLSSSAVRPTLVKPPEYMPENLTTYSAWVGGAILAKVVFPQNQHVTKADYDENGPSIVHRKCF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00507 368 SUPERFAMILY Actin-like ATPase domain 138 368 IPR043129 -
Trre6g00507 368 PRINTS Actin signature 107 120 IPR004000 -
Trre6g00507 368 PRINTS Actin signature 224 240 IPR004000 -
Trre6g00507 368 PRINTS Actin signature 132 151 IPR004000 -
Trre6g00507 368 PRINTS Actin signature 52 74 IPR004000 -
Trre6g00507 368 PRINTS Actin signature 23 32 IPR004000 -
Trre6g00507 368 Gene3D Actin; Chain A, domain 4 172 259 - -
Trre6g00507 368 FunFam Actin-related protein 7 4 134 - -
Trre6g00507 368 Pfam Actin 2 368 IPR004000 -
Trre6g00507 368 CDD NBD_sugar-kinase_HSP70_actin 4 173 - -
Trre6g00507 368 SMART actin_3 1 368 IPR004000 -
Trre6g00507 368 SUPERFAMILY Actin-like ATPase domain 2 145 IPR043129 -
Trre6g00507 368 Gene3D - 130 331 - -
Trre6g00507 368 PANTHER ACTIN 4 361 IPR004000 -
Trre6g00507 368 Gene3D - 5 362 - -
Trre6g00507 368 FunFam Actin-related protein 7 172 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00507 Trre-Chr6 3662403 3667947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00507 1 368 Cytoskeleton Gene Families AT3G18780 36.979 3.58e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00507 K16615 - gmx:100794153 659.448