Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00500 ATGGTTCAGACACGCCAAACAACCCATAAAGGCTCATATGTTGATTCTGAAGATGAAGAGAACATTAGTTTGGAAGATGATGTAGAGATAATTGACATTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAATGGGTTGATTCATGAAGTTATTGAAATTGAAAGTGATGAAGATGATTATGATTTGGAAGAAGACCTAATGATGATTGAAGAAGAAACTATGAGGTTTATTCCTGCGGCTAAATCGTGTCTTGAAGAATTGAAGATGGTAAAAGCAGAAGAAATAACAAAATGTACCATTTGTTTTGAAGATGTTAACGTTGGTGTTTCACTTCCATGTTCCCATATGTTTCATATGAATTGCATTCAAGATTGGTTGGTGATAGGTCATTGTTGCCCTTTGTGTAGGTTTCAATTGCCTATGAGTGAATAA 435 0.3448 MVQTRQTTHKGSYVDSEDEENISLEDDVEIIDIEEEEEEEEEEDNGLIHEVIEIESDEDDYDLEEDLMMIEEETMRFIPAAKSCLEELKMVKAEEITKCTICFEDVNVGVSLPCSHMFHMNCIQDWLVIGHCCPLCRFQLPMSE 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00500 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 144 IPR013083 -
Trre6g00500 144 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 17 141 - -
Trre6g00500 144 ProSiteProfiles Zinc finger RING-type profile. 99 137 IPR001841 -
Trre6g00500 144 SUPERFAMILY RING/U-box 98 142 - -
Trre6g00500 144 MobiDBLite consensus disorder prediction 1 22 - -
Trre6g00500 144 Pfam Ring finger domain 98 137 IPR001841 -
Trre6g00500 144 SMART ring_2 99 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00500 Trre-Chr6 3630125 3633794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00500 68 141 C3H Transcription Factor Family AT5G60820 37.079 2.62e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00500 - - tpra:123916835 148.288