Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00499 ATGGAAGAATATGATTGCCATGCATACCCAGACAATAAGTCCAACAATTCTGGCACAGAAAATATTTCATCATGCCCCCATGGCCATGATAAATATTTCAATGTAGAGTTTGAGTGCACAAATTCTACTACTTTGCGTGAGGGAAGAAAGTGTCTCACTTCTTGTGGGACAACGCGTCACGCCTTTTCAAATGTCTCGGTGGATAAAATAATGCAAGAAACTACCATCGTATCATGGCTTTCTCAAATGGATGTTCCTCGTGATGCTTTTAATATTGTAGTGGCAAAAGTCTTGGAATGTGCTCGTGATATGGTTAATAAGACTCATAATAATCTAAAGGTTCTTTCTATTCGAGTCAATATTGAAGTTAAAAGAACCCCTGAAGATGAAAGCAATGATGATGAAAGTGGTGAAAGTAGCGAAAGCGATGAAGAAGACGATGAAAGTGGTGAAACTAGTGAAAGTAATGGAGAGAGTGATGAAATTAGTGAAAGCAGTGAAGAGGATGATGATGATGACTACGATGATGACTCTGATGAAGATGATGTGTTGGTTCCTGCATCAAAGTCGTCTATCGAGGAATTGGAGACAGTGGTTGGTGAAACAGAGAAAAAATGTGAGATTTGTTATGAAAATTATACCGTTGGTATTCGTATGCCATGTTTGCACATGTTTCATAGGGAATGCATTCTTAGTTGGTTAGAGAGGACCAATTCTTATCCTTATTGTAGGTTTGAATTGCCCGCAAACAAGTGA 756 0.3849 MEEYDCHAYPDNKSNNSGTENISSCPHGHDKYFNVEFECTNSTTLREGRKCLTSCGTTRHAFSNVSVDKIMQETTIVSWLSQMDVPRDAFNIVVAKVLECARDMVNKTHNNLKVLSIRVNIEVKRTPEDESNDDESGESSESDEEDDESGETSESNGESDEISESSEEDDDDDYDDDSDEDDVLVPASKSSIEELETVVGETEKKCEICYENYTVGIRMPCLHMFHRECILSWLERTNSYPYCRFELPANK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00499 251 SMART ring_2 206 243 IPR001841 -
Trre6g00499 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 251 IPR013083 -
Trre6g00499 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 138 248 - -
Trre6g00499 251 MobiDBLite consensus disorder prediction 125 191 - -
Trre6g00499 251 ProSiteProfiles Zinc finger RING-type profile. 206 244 IPR001841 -
Trre6g00499 251 MobiDBLite consensus disorder prediction 132 182 - -
Trre6g00499 251 SUPERFAMILY RING/U-box 205 248 - -
Trre6g00499 251 Pfam Ring finger domain 205 244 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00499 Trre-Chr6 3628327 3629082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00499 144 248 C3H Transcription Factor Family AT1G14200 33.051 5.03e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00499 - - mtr:11431540 183.341