Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00471 ATGGCGGAATTTCGTCCACCTAAGCGCTACAAAATTAGCAGGGGTGATGATGATTATATGCCTGGAAACATTCTAGAGATCGAGCTTTGCAATTTCATGACATTTGATTACTTAAAATGTAAACCCGGACCTCGGTTGAATCTCGTAATTGGGCCCAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTTGGCCTCTGTGGAGAGCCTAAGTTGCTTGGGCGAGCCACGAGAATCGGGTTATATGTAAAGAGGGGCGAACAGTCCGGGTTCATTAAGATTACCTTGAGAGGGGACAATAAAGAGGATCACATTACGATTATGCGTAAAATAAATACTAGAAACAAGTCTGAATGGTTTTTAAATGGAAATATTGTGTCCAAACAGGATGTGGCTGAAACCATTCAGAGGTTTAACATCCAAGTAAATAATTTGACTCAATTTTTACCGCAAGATAGGGTCTGTGAGTTTGCAAAGTTAACTCCTGTGCAACTTTTGGAAGAGACCGAAAAGGCTGTTGGTGATCCACTTCTTCCAGCGCAACATGGTGCACTAATTGATAAAAGTCGCGAATTAAAGCATGTTGAGCTGTCTCTTGAGAAAAATGAAGGAACCTTAAATCAGTTGAAGGAATGTAATGCTGAATTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGATGGACTTCTTGCCAAGGCCAAATCAATGAAAAGGAAATTGCCATGGCTGAAGTATGATATGAAGCAGGCAGAATATCGTGAAGCTAAGGAGCGTGAAAAGACTGCTGCAGAGGAGTCAGAGAAAGCTGCAAAATTATTAAATGAACTTAAAGAGCCTATTGAGAAACAAAAAAACGAGAAAACTGCATTAGATGCAAAATACAAAAAGGTTAGCAACCTGATAAATGATAATGACAAGAAGAGAATGGGACTTATGGAGAAAGACAACCAATTGGAAGTGGAATTCCAAGGAAAATACAAAGAGATGGATGAGTTGAAGAGGCAGGAGGAAACTCGGCAACAGAAATTTATCAACGCTAGGGAGGAACTTGCTGCTGCTGAACTTGAACTTAAGAATCTAGACCCTTTTGTACATCTTGAGGATGAGATTAAAAGACTTGGAGATGAAATTCTGGATTTGGTTAGTTCTGCTGATCAAGCGAGAGATAATAAGTCACAAGCAGACACCGAAGTAAAGGTTAAAAGGTCCTCCTTGACGAGGTGTAGAGAGAGGTTGAAGGAAATGAGTAATAAAAGTACCAACTGTTTGCGTGCATTGGAAACATCTGGTGTGGAAAAAATTTCTGAAGCTTATAATTGGGTCGAAGCACATCGCCATGAATTCAAAAAGGAGGTTTATGGCCCAGTTTTAGCTGAGGTGAATGTCCCTGATCAGTCTCATGCTGGATATCTAGAGGGTCAAGTTGCTTGGTACATTTGGAAGTCTTTTATAACACAGGATCCTTGTGATCGGGACTTTTTGGCAAAAAACCTACGGAACTATGATGTACCAGTTTTAAATTATACTGGTCCTGATAGCCACCAAAGAAATCCGCCACCTGAAATATCTGCCGATATGCGTGCTCTTGGTGTCAACTCCCGTTTGGACCAAATTTTTTATGCTCCTGTTGCTGTCAAGGAGGTGTTGATTAGCGAATTCAAACTTGATCATTCATTTATTGGATCGAAAGAAACTGATCAGAAAGCTCAGGAGGTCCGAAAATTGGGAGTTACTAGTTTATGGACACCAGATAATCACTATCGCTGGTCTAAGTCTAGATATGGAAATCATGTCTCGGTACTTGTTGATCAAGTGCGACAACCACGATTTCTTCTGAATAACTTAAATGTGAGGGACATTGAAAATCAGAGCTGCCAGGAAAGGGAGCATCAAGAACTCATTGCTTCCTTGGAGGAAAGTATCAAAAGGTTTCAAGAAGAGGAAAAATGCTTACGGAATCAGGCTGCTAATCTTGGTAAACAAAAGAAGGACATTATTAATACAGTACAGAATGAGAAAAAAAAACGAGAAGAAAAAATTCAGTATATTGAACAAAAGAAAGGGATACTGAAGTCGATGGAGGAACAAGATGATTTGGATACCGAGTTAGTGAAGCTTGTTGATCAGGCAACAGAATGTAACATTCAGCGATTTCATAATGCAATTAAAATGAAGGATCTTCTTGTTGAATCTGTGGGTTACAGTCAAAGTTATGTTGAACAACGAATGGCTTTCTTTGAATTTGATGCAAAGATCGGAGAAATGGAAGCCAATTTGAAGCATCACGAAAATTTTGCTCAGCAAGCATCATTGCACTTTGAAAATTCTAAGAAAGAGGCCGATGAATGTAGACAGAAGCTTTCAGAGTTATTGAACTATGCTAAATCAATTGTCGAACTTACACCTAACGTAGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAGTTGGAAGAAGCTATCCTAGATACAACTTCTCAAGCTAATTCAATCCTTTTTGTCAATCATAACATATTGAAAGAATATGAGGATCGTCAAAGACAGATAGAAGAGCTTGCAACAAAACTTGATGCAGACAAGAAGGAATCTAGAAGGTGTCTAGCTGAGTTGGATAACATTAAGGGAAAATGGCTTCCAACACTCAGAAACCTTGTAACCCAGATAAATGAAATATTTAATCAAAATTTTCAACAAATGGCTGTTGCCGGAGAAGTTTCATTAGATGAACATGATATGGACTATGATAAATTTGGAATACTTATAAAAGTCAAATTCAGAGAAAATGGACACCTTCAAGTTCTCAGTGCCCATCATCAATCTGGAGGGGAGAGATCAGTTTCAACTATTGTTTATCTAGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAATCAAGGTATGGACCCAATAAATGAAAGGAAAATGTTTCAGCAATTAGTGAGAGCAGCAAGCAAGCCAAATACACCACAGTGTTTCTTACTTACCCCAAAGTTGTTACCAGATCTGGAATATAGTGAGGCATGCAGTATATTGAATGTAATGAATGGCCCTTGGATTGAGCAACCCTCAAAGATCTGGAGCACTGGTGATCAATGGAGTATTATCACTGGACAATGTTGA 3147 0.3899 MAEFRPPKRYKISRGDDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPKLLGRATRIGLYVKRGEQSGFIKITLRGDNKEDHITIMRKINTRNKSEWFLNGNIVSKQDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPLLPAQHGALIDKSRELKHVELSLEKNEGTLNQLKECNAELEKDVERVRQRDGLLAKAKSMKRKLPWLKYDMKQAEYREAKEREKTAAEESEKAAKLLNELKEPIEKQKNEKTALDAKYKKVSNLINDNDKKRMGLMEKDNQLEVEFQGKYKEMDELKRQEETRQQKFINAREELAAAELELKNLDPFVHLEDEIKRLGDEILDLVSSADQARDNKSQADTEVKVKRSSLTRCRERLKEMSNKSTNCLRALETSGVEKISEAYNWVEAHRHEFKKEVYGPVLAEVNVPDQSHAGYLEGQVAWYIWKSFITQDPCDRDFLAKNLRNYDVPVLNYTGPDSHQRNPPPEISADMRALGVNSRLDQIFYAPVAVKEVLISEFKLDHSFIGSKETDQKAQEVRKLGVTSLWTPDNHYRWSKSRYGNHVSVLVDQVRQPRFLLNNLNVRDIENQSCQEREHQELIASLEESIKRFQEEEKCLRNQAANLGKQKKDIINTVQNEKKKREEKIQYIEQKKGILKSMEEQDDLDTELVKLVDQATECNIQRFHNAIKMKDLLVESVGYSQSYVEQRMAFFEFDAKIGEMEANLKHHENFAQQASLHFENSKKEADECRQKLSELLNYAKSIVELTPNVEKEFLEMPTTIEELEEAILDTTSQANSILFVNHNILKEYEDRQRQIEELATKLDADKKESRRCLAELDNIKGKWLPTLRNLVTQINEIFNQNFQQMAVAGEVSLDEHDMDYDKFGILIKVKFRENGHLQVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLEYSEACSILNVMNGPWIEQPSKIWSTGDQWSIITGQC 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00471 1048 Coils Coil 201 228 - -
Trre6g00471 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 329 IPR027417 -
Trre6g00471 1048 Coils Coil 282 302 - -
Trre6g00471 1048 Coils Coil 668 688 - -
Trre6g00471 1048 Gene3D - 847 1023 IPR027417 -
Trre6g00471 1048 Coils Coil 622 663 - -
Trre6g00471 1048 Coils Coil 331 351 - -
Trre6g00471 1048 FunFam Structural maintenance of chromosomes 5 849 1020 - -
Trre6g00471 1048 Gene3D - 23 218 IPR027417 -
Trre6g00471 1048 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 5 1042 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Trre6g00471 1048 Coils Coil 838 865 - -
Trre6g00471 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 775 1004 IPR027417 -
Trre6g00471 1048 Pfam RecF/RecN/SMC N terminal domain 25 994 IPR003395 -
Trre6g00471 1048 Coils Coil 247 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00471 Trre-Chr6 3406778 3422543 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00471 5 1042 Structural Maintenance of Chromosomes family AT5G15920 59.827 0.0 1242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00471 K22803 - gmx:100778678 1534.24