Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00468 ATGGCGGAATCTCGCCCACCTAAGCGCCACAAAGTTAGCAGGGGTGATGATGATTATATGCCTGGAAACATTCTAGAGATCGAGCTTTATAATTTCATGACATTTGATTACTTAAAATGTAAACCTGGTCCTCGGTTGAATCTCGTAATTGGGCCTAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTTGGTCTCTGTGGAGAACCCCAGTTGCTTGGGCGAGCCACGAGTATCGGGGCATATGTGAAGAGGGGGGAAGAATCTGGTCACATTAAGATTACCTTGAGAGGAGACCAGAAGGACGAGCACATTACGATTATGCGTAAAATAAATACTAGCAACAAGTCTGAATGGTTTTTCAATGGAAATATTGTGGCCAAAAAGGATATTGCTGAAACCATTCAGAGGTTTAACATCCAAGTAAATAATTTGACTCAATTTTTACCGCAAGATAGGGTCTGTGAGTTTGCAAAGTTAACTCCTATTCAGCTGCTGGAGGAGACTGAAAAGGCTGTTGGTGATCCACAGCTTCCAGAGCAACATCGTGCACTAATTGATAAAAGTCGTGCATTAAAGCATGTTGAGTTGTCTCTTGAGAAAAATGAAGGAACTTTAAATCAGTTGAAGGAACATAATGCTGAATTAGAGAAGGATGTTGTACGTGTTCGTCAAAGAGATGAACTTCTTGCCAAGGCCGAATCAATGAAAAAGAAATTGCCATGGCTGAAGTATGATATGAAGCAGGCAGAATATCGGGAAGCTAAGGAGCGTGAGAAGATTGCATCAAAGGAGTTGGAGAAAGCAGCAAAATTATTAAATGAACTTAAAGAGCCTATTAAGAAACAAAAGGATGAAAAAGCTGCATTAGAAGCAAAATGCAAAAAGGTTAACAACAGATTGGATGAGAATACCAAGAAGAGAATGGAACTTATGGAGAAAGAGAGCCGATTGGAAGTGGAATTACAAGGAAAGTACAAAGAGATGGACGAGTTGAAGAGGCAGGAAGAAACTCGGCAACAGAAATTTATCAACGCTAGGGAGGAACTTGCTGCTGCTGAAATTGAACTTAAGAATCTAGACCCTTTTGTACCTCCCAAGGATGAGCTTCAAAGACTGAGAGAGGAAATTCTGGAGCTGGATAGTTCTGCTAATCAAGCGAGAGATAATAAGTTACAAACAGAAAACGAAATAAAGGTTAAAAGGTCCTCCTTGGCAAGGTGTAAAGAAAGGTTGAACGAAATGAGTAATAAAAGTACCAAGTGTTTGCATGCATTGCAAAGATCTGGGGTTGAAAAAATTTTTGACGCTTATCGTTGGGTCCAAGCACATCGCCATGAATTTAACAAGGAAGTTTATGGTCCAGTATTAGTAGAGGTGAATGTCTCAGATCAGTCTCATGCTGGATATCTAGAGGGTCAAGTTGCTTGGTACACTTGGAAGTCTTTCATAACACAGGATCCTCGTGATCGGGACTTTTTGGTGAACAACCTAAGGAATTTTGATGTACCAGTTTTAAATTATACAGGTCGTGATAGCCGACAAAGAGAGCCGCCTCCTGAAATATCTCCTGATATGCGTGCTCTTGGTGTCTACTCCCGTTTGGACCAAATATTTGATGCTCCTGTTGCTGTCAAGGAGGTTTTGATTAGCCAATCTAATCTTGATCATTCATTTATTGGATCGAAAGAAACTGATCAGAAAGCTGATGGGGTCCCAAAATTAGGAATTTCTAGTTTATGGACACCAGACAACCACTATCACTGGTCTAAGTCTAGATATGGAAACCATGTCTCGGCAGTTGTTGAACAAGTAGAACGCCCAAAACTTCTACTGAATAACTTAAATGTGAGGGACATTGAGGATCTGAGGTCCCAGGAAAGGGAGCTTGAAGAACAAATTGCTTCCTCGGAGGAAATTATCAAACGGTTTCAAGACGAGGAAAGAAGCTTTATGAATCAGGCTGCTAATCTTCGTAAACAGAGTGAGGCCATTCGTAGCGAAGCACAAAAGAAGAAACAAGAGCGAGAAGCAATAAATAGGCGTATTGAACAAAAGAAAGCGAAACTGAAATTGATGGAGGAACAAGATGATTTGGATACTGAGTTAGCAAAGCTTGGTGATCAGGCAACAAAATGTAACATTCAGCGTTTCCATAATGCAATTAAAATTAAGGATCTTCTTGTTGAAGCTGCGGGTTACAGACGAAATTATGTTGAACAACGTATGGCTTGCATTGAATTTGATGCAAAGATTAGAGAAGTGGAAGCAAATTTGAAGCAGCATGAAGATTTAGCTCTGCAGGCATCATTGCAATTTAATAACTCTAAGAAAGAGGCTGAAGAATGTAGACAGAAGCTTACAGATTTATTGAACTATGCTAAGTCAATTGCTCGGCTTACACCTAACCTAGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAGTTGGAAGCAGCTATCCAAGATACAACTTCTCAAGCAAATTCAATACTTTTTGTCAATAGTAACATATTGGAACAATATGAGATACGGCAAAGACAGATAGAAGATCTTGCAACAAAACTTGATGCAGACAAGAAGGAATCGAGAAGGTTACTAGCTGAACTGGATAACGTTAAGGGAAAATGGCTCCCTACACTGAGAAACCTTGTGGCCCAGATAAATGAAACTTTCAGTCGAAACTTTCAACAGATGGCTGTTGCCGGAGAAGTTTCACTAGATGAGCATGATATGGACTTTGATAAATATGGAATACGTATAAAAGTCAAATTCAGAGAAAATGGACAGCTTGAAGTTCTCAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAATCAAGGTATGGACCCAATAAATGAAAGGAAGATGTTTCAGCAATTAGTGAGAGCAGCAAGCAAGCCAAATACACCACAGTGTTTCTTGCTTACCCCAAAATTGTTGCCAGATCTCCAATATAGTGAGGCATGCAGTATATTGAATGTAATGAATGGCCCTTGGATTGAACAACCAGCAAAGGTCTGGACTACTGGTGATCAGTGGAGTATTATCTCTGGGCATGTTGGAGAGACCCGATGTTAA 3162 0.4013 MAESRPPKRHKVSRGDDDYMPGNILEIELYNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGHIKITLRGDQKDEHITIMRKINTSNKSEWFFNGNIVAKKDIAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPIQLLEETEKAVGDPQLPEQHRALIDKSRALKHVELSLEKNEGTLNQLKEHNAELEKDVVRVRQRDELLAKAESMKKKLPWLKYDMKQAEYREAKEREKIASKELEKAAKLLNELKEPIKKQKDEKAALEAKCKKVNNRLDENTKKRMELMEKESRLEVELQGKYKEMDELKRQEETRQQKFINAREELAAAEIELKNLDPFVPPKDELQRLREEILELDSSANQARDNKLQTENEIKVKRSSLARCKERLNEMSNKSTKCLHALQRSGVEKIFDAYRWVQAHRHEFNKEVYGPVLVEVNVSDQSHAGYLEGQVAWYTWKSFITQDPRDRDFLVNNLRNFDVPVLNYTGRDSRQREPPPEISPDMRALGVYSRLDQIFDAPVAVKEVLISQSNLDHSFIGSKETDQKADGVPKLGISSLWTPDNHYHWSKSRYGNHVSAVVEQVERPKLLLNNLNVRDIEDLRSQERELEEQIASSEEIIKRFQDEERSFMNQAANLRKQSEAIRSEAQKKKQEREAINRRIEQKKAKLKLMEEQDDLDTELAKLGDQATKCNIQRFHNAIKIKDLLVEAAGYRRNYVEQRMACIEFDAKIREVEANLKQHEDLALQASLQFNNSKKEAEECRQKLTDLLNYAKSIARLTPNLEKEFLEMPTTIEELEAAIQDTTSQANSILFVNSNILEQYEIRQRQIEDLATKLDADKKESRRLLAELDNVKGKWLPTLRNLVAQINETFSRNFQQMAVAGEVSLDEHDMDFDKYGIRIKVKFRENGQLEVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPAKVWTTGDQWSIISGHVGETRC 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00468 1053 Coils Coil 201 228 - -
Trre6g00468 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1046 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Trre6g00468 1053 Coils Coil 747 774 - -
Trre6g00468 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 761 1004 IPR027417 -
Trre6g00468 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 280 IPR027417 -
Trre6g00468 1053 Pfam RecF/RecN/SMC N terminal domain 24 994 IPR003395 -
Trre6g00468 1053 Coils Coil 247 351 - -
Trre6g00468 1053 Coils Coil 615 698 - -
Trre6g00468 1053 Gene3D - 847 1022 IPR027417 -
Trre6g00468 1053 Coils Coil 372 399 - -
Trre6g00468 1053 Gene3D - 23 211 IPR027417 -
Trre6g00468 1053 FunFam Structural maintenance of chromosomes 5 849 1020 - -
Trre6g00468 1053 Coils Coil 842 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00468 Trre-Chr6 3379695 3396187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00468 1 1042 Structural Maintenance of Chromosomes family AT5G15920 61.804 0.0 1283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00468 K22803 - gmx:100778678 1652.11