Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00452 ATGGCTCTCTATTCTAAAACACAACCATACACAATAACCACATTCATTTTCTTCTTTCTTCTACTCACTCTGCCACACTCCACTTCTGCTTCCACTGATTTTGTTGCTCCAACCTGTCTCCGAGTTACTCCCACGAAATTTGTCGATTCTGCCAAAGAAGTTATCACCATTTTAGAACGTGTCACCTCCATTTTATCAGGCTTCAATGTCTTTGGCCACTCTAGTCTCTCAAACGCCATTTCCGATTGCCTTGAATTACTCGACATGTCCGCCGAACAACTTAGTTGGTCTATGTCTGCATCGCAAAATCCCAAAGGGAAGGATAACAGTACTGGAAATCTAAGCTCTGACCTAAGAACATGGTTGAGTGCTGTTCTTGTGAATCCTGACACATGTATAGATGGATTAGAAGGTACAGTTGTGAAGGGTCTTGTATCAAATGCTCTTGATCTTGTAATGTCCTTAGTGAAGACTCTTCTAGCTGAAGTAGATCCTAGCAATGATCAATTCATAACTTCTACCGGTTCGGATCAATTTCCGTCTTGGATTAATGACGAGGACAAGAAGCTGTTAAAAGAAAATAGAATGGCTGCTGATGCTGTTGTGGCGGCCGATGGAAGTGGGGATTACCGGAAGGTGACGGATGCGATATCGGCAGCACCTGAATATAGCATGAAAAGATATGTTATATATGTAAAGAAAGGTGTTTATCTTGAAAATGTTGAGATTAGTAAGAAAAAATGGAATATTATGATGATCGGTGATGGTATCGATGCTACTGTTATCTCCGGTGGTCGGAATAAAGTCGATGGTTGGACTACATTTCGATCAGCTACCTTTGCGGTAAATGGTAGAGGTTTTATAGCACGCGATATTTCATTTAAGAACACAGCTGGCCCTGAGAAGCACCAAGCAGTGGCATTAAGATCAGACTCTGACCTCTCTGTATTTTATCGCTGTGGGATATTCGGCTATCAAGATAGCCTATATCCTCACTCTATGCGTCAATTCTACAGAGAGTGCAGAATCGCGGGTACAGTGGATTTCATTTTTGGAGACGCCACAGCCGTGTTCCAGAATTGCCAAATACTAGCCAAGAAAGGAAGTCCTGAACAAAAGAACACTATTACTGCTCAAGGACGAAAAGACCCGAATCAACCAACCGGTTTTTCCTTCCAATTTTGCAACATTTCAGCAGACTCGGATCTTCTACCATCAGTTGGAACCATCCAAACATACCTAGGAAGACCTTGGAAGACTTATTCGAGAACAATTTTCATGCAATCCTACTTTAGTAACATAATAAGTCCGGAAGGGTGGCTAGAGATGAACGGAAAGTTTGCTTTGGACACATTAACTTACGGTGAGTACATGAACACTGGACCTGGTGCTGGGGTAGCTAGCCGGGTGAAATGGCCAGGGTATCGTGTATTAAATGATTCGAGGGAGGCCGGAAAGTTTACTGTGGCTCAATTTATTGAAGGGAATCTGTGGTTGCCTTCCACTGGTGTTGCTTACACTGCTGGTTTGACAGTATAA 1539 0.4263 MALYSKTQPYTITTFIFFFLLLTLPHSTSASTDFVAPTCLRVTPTKFVDSAKEVITILERVTSILSGFNVFGHSSLSNAISDCLELLDMSAEQLSWSMSASQNPKGKDNSTGNLSSDLRTWLSAVLVNPDTCIDGLEGTVVKGLVSNALDLVMSLVKTLLAEVDPSNDQFITSTGSDQFPSWINDEDKKLLKENRMAADAVVAADGSGDYRKVTDAISAAPEYSMKRYVIYVKKGVYLENVEISKKKWNIMMIGDGIDATVISGGRNKVDGWTTFRSATFAVNGRGFIARDISFKNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYPHSMRQFYRECRIAGTVDFIFGDATAVFQNCQILAKKGSPEQKNTITAQGRKDPNQPTGFSFQFCNISADSDLLPSVGTIQTYLGRPWKTYSRTIFMQSYFSNIISPEGWLEMNGKFALDTLTYGEYMNTGPGAGVASRVKWPGYRVLNDSREAGKFTVAQFIEGNLWLPSTGVAYTAGLTV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00452 512 Pfam Plant invertase/pectin methylesterase inhibitor 25 150 IPR006501 GO:0004857
Trre6g00452 512 Gene3D Invertase/pectin methylesterase inhibitor family protein 18 161 IPR035513 -
Trre6g00452 512 FunFam Pectinesterase 193 510 - -
Trre6g00452 512 Gene3D - 193 510 IPR012334 -
Trre6g00452 512 PANTHER PECTINESTERASE 51 500 - -
Trre6g00452 512 CDD PMEI-like_4 26 163 - -
Trre6g00452 512 ProSitePatterns Pectinesterase signature 2. 343 352 IPR033131 -
Trre6g00452 512 SUPERFAMILY Pectin lyase-like 196 509 IPR011050 -
Trre6g00452 512 Pfam Pectinesterase 199 496 IPR000070 GO:0030599|GO:0042545
Trre6g00452 512 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 152 IPR035513 -
Trre6g00452 512 SMART PMEI_2 30 151 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00452 Trre-Chr6 3269729 3272825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00452 15 510 Carbohydrate Esterase AT3G43270 61.868 0.0 657