Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00442 ATGCCTACTACAATTGAGGAGTTGGAAGAAGCTATCCAAGATACAACTTCTCAAGCTAATTCAATCCTTTTTGTCAATCATAACATATTGAAAGAATATGAGAACCGTCAAAGACAGATAGAAGAGCTTGCAACAAAACTTGATGCAGACAAGAAGGAATCTAGAACGTGTCTAGCTGAGTTGGATAACATTAAGGGAAAATGGCTTCCATCACTCAGAAACCTTGTGGCCCAGATAAATGAAGTTTTTAGTCAAAATTTCAAACAGATGGCTGTTGCCGGAGAAGTTTCACTAGATGAACATGATATGGACTATGATAAATTTGGAATACTTATAAAAGTCAAATTCAGAGAAAATGGACACCTTCAAGTTCTCAGTGCCCATCATCAATCTGGAGGGGAGAGATCAGTTTCAACTATTGTTTATCTAGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGTATGGACCCAATAAATGAAAGGAAAATGTTTCAGCAATTAGTGAGAGCAGCAAGTAAGCCAAATACACCACAGTGTTTCTTACTTACCCCAAAGTTGTTACCAGATCTGGAATATAGTGAGGCATGCAGTATATTGAATCTAATGAATGGCCCTTGGATTGAGCAACCCTCAAAGATCTGGAGCACTGGTGATCAATGGAGTATTATCACTGGACAATGTTGA 711 0.3812 MPTTIEELEEAIQDTTSQANSILFVNHNILKEYENRQRQIEELATKLDADKKESRTCLAELDNIKGKWLPSLRNLVAQINEVFSQNFKQMAVAGEVSLDEHDMDYDKFGILIKVKFRENGHLQVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLEYSEACSILNLMNGPWIEQPSKIWSTGDQWSIITGQC 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00442 236 Coils Coil 26 53 - -
Trre6g00442 236 Gene3D - 27 199 IPR027417 -
Trre6g00442 236 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 230 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Trre6g00442 236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 192 IPR027417 -
Trre6g00442 236 FunFam Structural maintenance of chromosomes 5 37 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00442 Trre-Chr6 3210947 3213110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00442 1 229 Structural Maintenance of Chromosomes family AT5G15920 77.293 3.27e-129 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00442 K22803 - gmx:100778678 421.394