Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00439 ATGGATGATGTAAGTTCTGAGGTTTCTGATAAGCTTTCAGATAATATTCTATTTTCAAATCCAGATTCATGTAGCAATTTTCAAGCTTCAACATCTTTGAACACAGTTACTGAATTATCTAAGAACACCACAAAAACATGCACTCACACTCACACTTGTAATCCACCTGGTCCTGATGATGCTATTCATACACACACATGTTTTCACACACATACTCAAGTTTTTGCATCTGAAGATGACACAAATTCAAGGCCAAAAAGGACTTCTGGCAATAGAGAAGCTGTTAAAAAGTATAGGGAGAAGAAAAAGGCACAAACAGCTTATTTGGAGGAAGAAGTTAAGAAGTTGAAACTGTTGAATCAACAACTATTGAGGAAATTACAAGGGCAGGCACTACTTGAAGCAGAATTGTTAAGGTTAAGGAAAGTTTTTGTACAACTTAAGGGAAAAATTGACAGTGAATTAGGTTCTTTCCCTTTTCAAAAGCAGTGTTTCTCTTCTAGTATTTACAAAGGAGATGCTAATTTGGTTTCTACTTCTCAACCAGTTGATCTTGAGCTATGTAGCACCGAAACTTCAGATTGA 585 0.3573 MDDVSSEVSDKLSDNILFSNPDSCSNFQASTSLNTVTELSKNTTKTCTHTHTCNPPGPDDAIHTHTCFHTHTQVFASEDDTNSRPKRTSGNREAVKKYREKKKAQTAYLEEEVKKLKLLNQQLLRKLQGQALLEAELLRLRKVFVQLKGKIDSELGSFPFQKQCFSSSIYKGDANLVSTSQPVDLELCSTETSD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00439 194 SMART brlzneu 78 146 IPR004827 GO:0003700|GO:0006355
Trre6g00439 194 Gene3D - 71 148 - -
Trre6g00439 194 PANTHER CCAAT/ENHANCER BINDING PROTEIN 33 159 IPR031106 GO:0003700|GO:0006351
Trre6g00439 194 Coils Coil 106 126 - -
Trre6g00439 194 CDD bZIP 91 113 - -
Trre6g00439 194 Pfam Basic region leucine zipper 81 134 IPR004827 GO:0003700|GO:0006355
Trre6g00439 194 SUPERFAMILY Leucine zipper domain 85 128 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00439 Trre-Chr6 3183196 3183780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00439 43 180 bZIP Transcription Factor Family AT3G51960 55.862 1.94e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre6g00439 bZIP_2 1.2e-12 CL0018