Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00404 ATGGAACGTGAAAAAGTTGTTCATATTATTGATCTCCATTGTTCCGAGCCAGCTCAATGGATAAATCTTATACAAACTTTAAAGAAACGTCACGGAGGTCCGCCTCATCTCAAAATTACAGGCATTCATGAAAAGAAGGAGGTATTGGACCAAATGAGCTTTCATTTGACAACTGAAGCCGGAAATTTGGATTTTCCTTTACAGTTCAATCCAATTGTTAGCAAACTTGAAGATGTTGATTTCGAAAACTTGCCTGTCAAGACAGGAGATGCTGTTGCAATTACTTCTGCTCTTCAGCTGCATTCTCTCCTTGCAACCGACGATGAAATGGTTGGGAAGATCTCGCCAGCAGGACCGTCATCAATCAATCTGCAGAGAGCGGGACAGATGGGACAGAGGACTTTCGCAGAGTGGCTCGAGAGAGATATGATCAATGCGTATATCTTGAGTCCCGATTCAGCATTATCACCTCTTTTTTTAGGTGCTTCACCTAAGATGGGGATCTTTCTTAACGCAATGCGGAAACTACAACCAAAACTTTTAGTGATTACTGAACAGGAATCAAATCTAAATGGATGTAATTTAATGGAGAGAATTGACCGAGCGTTGTACTTTTACACTTCACTTTTTGACTGCTTGGACTCAACTGTTACGAGAACATCCGTGGAGAGACTAAAACTTGAAAGCATGCTTCTTGGAGAGCAAATAAAAAACATCATTACTTGTGAAGGAGTTGATAGAAAGGAGAGGCATGAGAAGGTTGAGAAATGGATTAGAAGGCTTGAAATGGCTGGATTTGTGAAGGTACCTTTGAGTTACAATGGGAGAATGGAAGCAAAAAATCTATTGCAGCGTTATAGTCATAAATACAAGTTTAAAGAAGAAAATGATTGTTTGCTTATCTGTTGGAGTGATAGGCCACTCTTTTCTGTATCGGCATGGAGTTTTAGGAGATGA 957 0.4002 MEREKVVHIIDLHCSEPAQWINLIQTLKKRHGGPPHLKITGIHEKKEVLDQMSFHLTTEAGNLDFPLQFNPIVSKLEDVDFENLPVKTGDAVAITSALQLHSLLATDDEMVGKISPAGPSSINLQRAGQMGQRTFAEWLERDMINAYILSPDSALSPLFLGASPKMGIFLNAMRKLQPKLLVITEQESNLNGCNLMERIDRALYFYTSLFDCLDSTVTRTSVERLKLESMLLGEQIKNIITCEGVDRKERHEKVEKWIRRLEMAGFVKVPLSYNGRMEAKNLLQRYSHKYKFKEENDCLLICWSDRPLFSVSAWSFRR 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00404 318 Coils Coil 276 296 - -
Trre6g00404 318 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 311 IPR005202 -
Trre6g00404 318 ProSiteProfiles GRAS family profile. 1 315 IPR005202 -
Trre6g00404 318 Pfam GRAS domain family 1 314 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00404 Trre-Chr6 2810156 2811112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00404 1 318 GRAS Transcription Factor Family AT1G50420 51.543 5.27e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre6g00404 GRAS 3e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00404 - - lja:Lj3g3v0821290.1 570.466