Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00378 ATGAAAATTTCTTCATCTTCATCTCATCAAAACCAAGATGGAAAAAGTAAAGTTTCTGATATGAAGAAGAAAATGAAGAAATCAAAGTCAATAAAAATTTCTGATCTTGAAACTCTTCAAATTCAACAATCAACACCACCATCATCAGTTTCAAGAAAAACAACACAAGATGGTTCTCCAAATTACATGAAACCCACAAGTAGTTCACAATCAAAAAAGGAACTTTTTCATGTGAGTCTTAGAAAAACTCAATCTTGTTCTGTTTTTGAGAATCTTGATAGAAAATTTTCAAGTGATTCAAAAGCTATGTGTAAAAAACCTAGTTTGAGTTTGGTTAGAACATTAACAAAAACTACTAGTTTCAAAGGTTGTAGAAATTTTCCTAGAAAATCAACAAGAGCTACTTGTTCTTCAACTTTGAAAGATGCAAAATTTCCTTCATATCTTAAGCTTAATCATGGTGGAACTGAGTTAGAAGGAACTTCAGTTATGAGGGTTTGTTCATATAGTTATTGTTCTCTTAATGGTCATCATCATCATGGTGATTTGCCTCCTTTGAAGATGTTTATGTCTTCGAGGAGACGTGTTTTGAAGCGGGTGAAGCTTGAAGCGTTGAGTCCTCGAAGTCGAAGATTGAAGGTGGCGGGTGAGGTGGAAAAGAAGGACTGTGATGTTGAGCACAATGTGTTTGATGAAAAGCCTGAGTATGATGAAATTGGCATGGATTTCTTCATAGAAATATATGCTGATGAAAAAAAGGATGCAAAATCGAAAGGTGAAGAAGGAATTGGAAAAACTGATATTCTCGAAGATGTTGTTGATCATGAAGATGTAATCAAGTCTACAGTTGAAGATGATGGCATAGAAGCAGATTTTCTTAAAAAGGCCGAGGATCAAGAGAAAAATGAAGTTGCAGATGAAGATCAACAAACTAGTTGGTCTCATGAAGAAATGAGTATGGAAGGTGTTGACAATAACATGGATGATTCTGATTCGGAAGCCAGTAATATGGAGCATGATGAGGAACAATTTTATGGATTTGATCATGAACATGAGGCTGATTCTTCTGTTTACACAGATGAGGAAAATGAATCAAAATCTGAGTCCTCATCACAGAGTTCTCATGATGTGTCAGTGACATGGTTAGATGATATCCTTAGTAGCTATTATGATGACATTATTCTTGTTGATGAAACACTCAAAGAAGCCAAATCAGAAGAAAACATCTATCTAGAAGAACAAGATCATGATGAAAAAAGTGGAAGCAATGAGACTCACGAAATCGGTTACCCCTGCAGTGATGTCGGTTGCGACCGTTCTTCTTTGGCAGATGAAACATTTGGTTACTTAACAAACGCCGAAGAAAATGTTGACGAGACCAGCCAAGAGAACAAAGATGATAACATCAATAAAGTGAAGAGACAAATTCAACCGTCTCCGAGTGGATTTGAACTCTGTCCCTTGAGGCCAACAGACCAAACTCTTACAGCTGATCTGACACCTCATGAAGAGAAGAGTCAAATTCAATTATTTGATGTGGTTGAAGAAACCATCAAAGTTATTCAAGATCAAGGAAAAGGTAATAAAAGAACAAGTTGCATAGTTGATGAAGAGGAAGAGGAAAACACAAGAGAGAATTGGAAAGGTGTAATTAGGAGAAAGAGGTGTGTTGAAGAGGATGATGATGAAATGAGGAAGTTCAATCCAAGAGATCCAAATTTTTTGCCTTTGGTTCCGGAAAAAGAAAAGGAAAAAGTTGATTTGAGGCATCAAATGATGGATGAGAGAAAGAATGCAGAGGACTGGATGGTTGATTGTGCACTAAGACAAGCTGTTAACAAGCTTGCTCCTGCTAGGAAGAAGAAGCTGATAGATCCTGCTAAGGTAAAGGTCAACCCAAGATGA 1905 0.3654 MKISSSSSHQNQDGKSKVSDMKKKMKKSKSIKISDLETLQIQQSTPPSSVSRKTTQDGSPNYMKPTSSSQSKKELFHVSLRKTQSCSVFENLDRKFSSDSKAMCKKPSLSLVRTLTKTTSFKGCRNFPRKSTRATCSSTLKDAKFPSYLKLNHGGTELEGTSVMRVCSYSYCSLNGHHHHGDLPPLKMFMSSRRRVLKRVKLEALSPRSRRLKVAGEVEKKDCDVEHNVFDEKPEYDEIGMDFFIEIYADEKKDAKSKGEEGIGKTDILEDVVDHEDVIKSTVEDDGIEADFLKKAEDQEKNEVADEDQQTSWSHEEMSMEGVDNNMDDSDSEASNMEHDEEQFYGFDHEHEADSSVYTDEENESKSESSSQSSHDVSVTWLDDILSSYYDDIILVDETLKEAKSEENIYLEEQDHDEKSGSNETHEIGYPCSDVGCDRSSLADETFGYLTNAEENVDETSQENKDDNINKVKRQIQPSPSGFELCPLRPTDQTLTADLTPHEEKSQIQLFDVVEETIKVIQDQGKGNKRTSCIVDEEEEENTRENWKGVIRRKRCVEEDDDEMRKFNPRDPNFLPLVPEKEKEKVDLRHQMMDERKNAEDWMVDCALRQAVNKLAPARKKKLIDPAKVKVNPR 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00378 634 MobiDBLite consensus disorder prediction 1 74 - -
Trre6g00378 634 MobiDBLite consensus disorder prediction 350 377 - -
Trre6g00378 634 MobiDBLite consensus disorder prediction 34 74 - -
Trre6g00378 634 MobiDBLite consensus disorder prediction 295 338 - -
Trre6g00378 634 Coils Coil 450 470 - -
Trre6g00378 634 MobiDBLite consensus disorder prediction 350 369 - -
Trre6g00378 634 Pfam Plant calmodulin-binding domain 529 622 IPR012417 GO:0005516
Trre6g00378 634 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 3 622 IPR044681 GO:0005516
Trre6g00378 634 SMART CaM_binding_2 523 625 IPR012417 GO:0005516
Trre6g00378 634 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00378 Trre-Chr6 2635611 2638111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00378 505 623 Calmodulin-binding Proteins AT2G38800 45.378 4.82e-22 98.6