Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00375 ATGGAACAACAAACACTACCTTCTTTGTCTTCTTTCACATGTGATTGGGCTTATGATCATCAAAGAGGTATACAAACTTTCATTGATGATGAAGAAATTCAAAAAGGAGATGAAATCACACCTACTCTTCTTCAAGCCATTAAAGAGTCTAGAATTTTCATTGCTATTTTCTCCCCAAACTATGCATCTTCAACGTTTTGTTTGACTGAACTTGTTACCATCCTTGAGTGTTCAAAGTTACAAGGAAGGTTGTTTTTGCCGGTATTTTATGATGTGAATCCATCCCATGTTAGAAACATAACTGGTACTTATGCTGAAGCTTTTGTAAAACATGATGTGAGATTTGCAGAGGAGAAGGAAAAGGTGCAGAAATGGAGGGATGCTTTACGTCAAGCTGCTAATATTTCTGGATGGCATTTCGAACATTTCTTACATTTCACACCAGGGTCTGAATCAGAATATAAGTTTATTGGAAAGATAGTTGAAGAGGTCTCAATAAAGATCAACCGCGCTCCTTTGCATGTTGCAAACAAACCAATTGGATTGGAGTCTCGAATGTTAGAAGTGACATCTCTCCTTCGACTTGAGTCCGGTGAGAGAGTCAGCATGATAGGCATTTATGGAATCGGCGGAATTGGAAAATCAACAACAGCTCGTGCTGTGCATAACTTGATTGCAGATCAATTTGATGGTGTGTGTTTTCTTACTGACATAAGAGAGAGGGAAATTCATCATGGTCTTGTACAACTCCAAGAAACATTACTTTCTGAAATACTTGGAGAGAAGGATATTAAAGTGGGAGATGTTTACAAAGGAATTTCAATAATTAAAAGGAGGCTTCAAAGAAAGAAAGTTCTTTTGATTCTTGATAATGTTGACAAAGAAAAGCAGTTACAGGCACTTGTAGGAGGACATGATTGGTTTGGCTTCGGCAGCAAGATCATAATCACTACAAGAGACAAGCATTTGCTGGCTACTCATGGGGTTGTGAAAGTATACGAGGTTAAACAACTAGAAAACGAAAAGGCTCTTGATTTATTTAGTTGGCATGCATTTAAAAATAAAAATATTGATCCATGTTATTGGGATATTGCAAAACGTGCAGTATCTTATTGTCATGGTCTTCCCTTGGCTTTGGAGGTGATAGGTTCTCAATTGTTTGGAAAAAGTTTGGCTGTATGGGAATCCTCTTTAGATAAATATGCAGGAGTCCTTCGTAAAGACATACATGAAATTCTGAAAGTTAGCTATGATGATTTGGAAGAAGATGTGAAGGGTATTTTTCTAGACATCGCCTGTTTCTTCAATTCTTATGATATAGGCTATGTCAAAGAAATACTATACCACCATGGTTTTCATGCGGAAGATGGCATACAAGAGCTAACTGACAAATGTCTCATGAAAATTGATGTCAATGGTCGTGTGAGAATGCATGACTTAATTCGAGACATGGGCAGAGAAATCGTGAGGCAGGAATCACCATTGGAACCTGGAAGGCGCAGTAGATTGTGGTTTAGTGATGACATTGTTCATGTTTTGGAAGAAAACACGGGAACTGATACAATTGAAGTCATAATCGTCGACTTGCATAAAGACAGAAAAGTGAACTGGTGTGGAGATGCCTTTGGACAGATGAAGAACTTGAGAATTCTTATAATTAGAAATGCACAATTTTCCAGTGGTCCTCAAATTCTTCCAAATAGTTTGAGAGTGCTTGATTGGTATGGATATCAATCATCCTCTTTACCATCCAGTTTTAATGGCAAGAATCTTGCAGTGTTTGAGACGTTGAACTTTCTGAATTTTGAAGGCTGCAAGTTCCTCATTGAAGTACCTAGTTTATCTAGTGTACCAAATTTGGGGGCATTATGTCTTGATGACTGCACTAATTTAAATAGAATCCATGACTCGGTTGGTTTTCTTGACAAACTTGTTTCTTTAAGTGCTCAAGATTGCACCCAACTAGAAAATTTGGTTCCTTCCATCAACTTGCCATCTTTAGTTACTTTAGATCTAAGTGGTTGCTCACGTCTTGAGAGCTTCCCAGAAGTACTAGGAGTGATGGAGAATATAAAAGATGTTTACTTAGACCATACTAGCATAAAACAATTTCCTTCTACAATTGGAAATCTTGTTGGGCTCCAACATTTGTTTTTGAGGGGTTGCTTTCAGCTACCAAGCTACATATTGCCTAAAGTTGAAATAATAACAACTTATGGCTGTGGGGGATTTCAATCATCTGAAAATGAAGAAAAAGTGAATCCAAAAGTGTTTGCAAATGCCATGTGTGTTTATAATGAATATAGGAAGACCTTTCTTAATGTGTATTCTAGTAATAATTGCTCCAACAATGTCATAGAAGTATGTAGTCCTTTGGAGAATGACCGTGGAAAAAATCTTGTGATTGATGAATTTGAAACCACTCTTTTTAGGCACAGAGAGGGGAGAATAAAACTGGAATCCGAAAGAAATAAATCTGGAAAGGGTTTCAAGTTGAAAGTACTCATCAATGGCACTACTCAACTCGCTTCTTCATGCGAATACATATTTTATTCACAAAAAGAGACGGAACATATGCTTTGTTGTGATCTACAATGCAAGGTGGAGGGTGTATTTTCAAAGAATGAGTGGAACTGGGTGGAGATTTTATGTGAGATGGAACATCTAATGCCCTGTGATTCTAAAAGGGTCACGACCCACCGGGATTGGACCACTACGACGATTCTAAAGTGGTCTCTCCTATATGTCTACCCTGAAAACGAAGAGGATGATTTCACCTTATTTGACAGTCATGATTTTCCTTCTGTTTCAAAAAAATTAAAAATGATAGCCCTTTATAAGTTGCAGGATATTCTCCCCAACATCATCCACCAATTAGGGCCAGATAACTTGGAAAATCTGAAAAAGCTAGCTGAAGCAGGAGCTGATGCAACCACAGCGAAATCTTGTCCCAAGGGAGACTTTTGA 2967 0.3778 MEQQTLPSLSSFTCDWAYDHQRGIQTFIDDEEIQKGDEITPTLLQAIKESRIFIAIFSPNYASSTFCLTELVTILECSKLQGRLFLPVFYDVNPSHVRNITGTYAEAFVKHDVRFAEEKEKVQKWRDALRQAANISGWHFEHFLHFTPGSESEYKFIGKIVEEVSIKINRAPLHVANKPIGLESRMLEVTSLLRLESGERVSMIGIYGIGGIGKSTTARAVHNLIADQFDGVCFLTDIREREIHHGLVQLQETLLSEILGEKDIKVGDVYKGISIIKRRLQRKKVLLILDNVDKEKQLQALVGGHDWFGFGSKIIITTRDKHLLATHGVVKVYEVKQLENEKALDLFSWHAFKNKNIDPCYWDIAKRAVSYCHGLPLALEVIGSQLFGKSLAVWESSLDKYAGVLRKDIHEILKVSYDDLEEDVKGIFLDIACFFNSYDIGYVKEILYHHGFHAEDGIQELTDKCLMKIDVNGRVRMHDLIRDMGREIVRQESPLEPGRRSRLWFSDDIVHVLEENTGTDTIEVIIVDLHKDRKVNWCGDAFGQMKNLRILIIRNAQFSSGPQILPNSLRVLDWYGYQSSSLPSSFNGKNLAVFETLNFLNFEGCKFLIEVPSLSSVPNLGALCLDDCTNLNRIHDSVGFLDKLVSLSAQDCTQLENLVPSINLPSLVTLDLSGCSRLESFPEVLGVMENIKDVYLDHTSIKQFPSTIGNLVGLQHLFLRGCFQLPSYILPKVEIITTYGCGGFQSSENEEKVNPKVFANAMCVYNEYRKTFLNVYSSNNCSNNVIEVCSPLENDRGKNLVIDEFETTLFRHREGRIKLESERNKSGKGFKLKVLINGTTQLASSCEYIFYSQKETEHMLCCDLQCKVEGVFSKNEWNWVEILCEMEHLMPCDSKRVTTHRDWTTTTILKWSLLYVYPENEEDDFTLFDSHDFPSVSKKLKMIALYKLQDILPNIIHQLGPDNLENLKKLAEAGADATTAKSCPKGDF 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00375 988 Gene3D - 166 332 IPR027417 -
Trre6g00375 988 PRINTS Disease resistance protein signature 203 218 - -
Trre6g00375 988 PRINTS Disease resistance protein signature 662 678 - -
Trre6g00375 988 PRINTS Disease resistance protein signature 279 293 - -
Trre6g00375 988 PRINTS Disease resistance protein signature 372 386 - -
Trre6g00375 988 Gene3D - 337 421 IPR042197 -
Trre6g00375 988 SUPERFAMILY Toll/Interleukin receptor TIR domain 21 138 IPR035897 -
Trre6g00375 988 SMART till_3 2 135 IPR000157 GO:0007165
Trre6g00375 988 Gene3D - 16 165 IPR035897 -
Trre6g00375 988 SUPERFAMILY "Winged helix" DNA-binding domain 408 514 IPR036390 -
Trre6g00375 988 Gene3D Ribonuclease Inhibitor 527 750 IPR032675 -
Trre6g00375 988 Pfam TIR domain 17 167 IPR000157 GO:0007165
Trre6g00375 988 ProSiteProfiles TIR domain profile. 1 168 IPR000157 GO:0007165
Trre6g00375 988 SMART AAA_5 200 338 IPR003593 GO:0016887
Trre6g00375 988 SUPERFAMILY L domain-like 527 736 - -
Trre6g00375 988 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 745 IPR044974 GO:0006952
Trre6g00375 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 431 IPR027417 -
Trre6g00375 988 Pfam NB-ARC domain 196 405 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00375 Trre-Chr6 2613127 2617609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00375 44 741 WRKY Transcription Factor Family AT4G12020 31.684 6.85e-84 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00375 - - mtr:11415136 1400.57