LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g00372	ATGGAAGAACAACTACCAACACTACCTTCATTGTCTTCATTCACATGTGATTGGACTTATGATGTTTTTCTCAGCTTTAGAGGCACTGATACTCGAAACAACTTCACTGGTAATCTCTACAATTCTCTACAGCATCAAAGAGGTATACAAACTTTCATTGATGATGAGGAAATTCAAAAAGGAGAACAAATCACACCTACTCTTCTAAAAGCCATTAAAGAATCTAGAATTTTCATTGCTATTTTCTCTCCTAACTATGCATCTTCAACTTTCTGTTTGACTGAACTTGTTACCATCCTCGAGTGTTCAAAGTTACAAGGAAGGTTGTTTTTGCCGGTTTTTTATGATGTGGATCCATCCCATGTTAGAAACATAACTGGTACTTATGCTAAGGCTTTTGCGAAACACGAGGCGAGGTTTAGAGATGAGAAGGAAAAGGTTCAGAAGTGGAGGGATGCTTTACATCAAGCTGCTAATATGTCTGGATGGCATTTCAAACCAGGGTCAGAACCAGAGTATAAGTTTATTGGAAATATAGTTGAAGAGGTCTCAATAAAGATCAATCGTGTTCCTTTGCATGTTGCAAACAACCCAGTTGGGTTGGAGTCGCGAATGTTAGAAGTGACATCTCTCCTTGGACTTCAGTCTGATGAGAGAGTCAACATGGTAGGCATTTATGGAATCGGCGGAATAGGCAAATCAACAACTGCTCGCGCTGTGCATAACTTGATTGCTGATAAATTCGAAGTTGTGTGTTTCCTTGCTGACATAAGAGAGAGGGAAAATCATCATGGTCTTGTACAACTCCAAGAAACATTACTTTCTGAAATACTTGGAGGGAAGGATTTTAAATTGGGAGATGTTAACCAAGGAATTTCAATAATTAAAAGGAGGCTTCAAAAAAAGAAAGTCCTTTTGATTCTTGATGATGTTGACAAAGAAAAGCAGCTACAGGCACTTGTAGGAGGACATGATTGGTTTGGCTTCGGCAGCAGGATCATAATCACTACAAGAAACAAGCATTTGCTGGCTACTCATGGGGTTGTGAAAGTATATGAGATTAAACAACTAGAAAATGAAAAGGCTCTTGATTTATTTAGTTGGCATGCATTTAAAAATAAAAACATTGATCCAGATTATGTGAATATTGCACAACGTGCAGTATCTTATTGTCATGGTCTTCCCTTGGCTTTGGAGGTGATAGGTTCTCAATTGTTTGGAAAAAGTTTGGCTGTATGGGAATCCTCTTTAGATAAATATGCAGGAGTCCTTCGTAAAGACATCCATGAAATTTTGAAAGTAAGCTATGATGATTTAGAAGAAGATGTGAAGGGAATTTTTCTAGATATAGCTTGTTTCTTCAATTCTTATGATATAGGCTATGTCAAAGAAATACTATACTACCATGGTTTTCATGTGGAAGGTGGCATCGAAGAATTAACTGACAAATGTCTCATGAAAATTGATGTCAATGGTCGTGTGAGAATGCATGACTTGATTCGAGACATGGGCAGAGGGATTGTGAGGCGGGAATCAACATTGGAACCTGGAGGACGGAGTAGATTATGGTTTAGTGATGACATTGTGCATGTTTTGGAAGAAAACACGGGAACTGATAGAACTGAAGTCATAATTGTCGACTTGGATAAAGACAGAAAAGTGAACTGGTGTGGAGAAGCCTTTGGACAGATGAAGAACTTGAGAATTCTTATAATTAGAAATGCACAATTTTCCAGTGGTCCTCAAATTCTTCCAAATAGTTTGAGAGTGCTTGATTGGTGTGGATATCAATCATCCTCTTTACCATCCATTTTTAATGGCAAGAATCTTGCAGTATTTGAGACGTTGAACTTTCTGAATTTTGAAGGCTGCAAGTTCCTAATTGAAGTACCTAGTTTATCTAGTGTACCAAATTTGGGGGCATTATGTCTTGATGACTGCACTAATTTAAATAGAATCCATGACTCGGTTGGGTTTCTTGACAAACTTGTTTCGTTAAGTGCTCAAGATTGCACCCAACTAGAAAGTTTGGTTCCTTCCATCAACTTGCCATCTTTAGTTACTTTAGATCTAAGTGGTTGCTCACGTCTTGAGAGTTTCCCAGAAGTAGTAGGAGTGATGGAGAATATAAAAGATGTTTACTTAGACCATACTAGCATAAAAACATTGCCTTCTACAATTGGAAATCTTGTTGGGCTCCAACGTTTGTTTTTGAGGGGTTGCTTTCAGCTACCATGCTACCTATTGCCTAAAGTTGAGATAATAACAACTTATGGCTATGGGGGATTTCAATCGTCTGAAAAAGAAGAAAACATGAATCCAAAAGTGTTTGCAAATGCCATGTGTGTTTATAATGAATATGGGAAGACCTTTCTTAATGTGTATTCTAGTAATAATTGCTCCAACGATGTCATAGAAGTGAGTAGTCCTTTGCAGAATGACCGTGGAAAAAATCTGGTGATTGATGAATTTGAAACCACTCTTTTTAGGCACAGAGAGGGGATAATAAAACTGGGTAAGCTTAGAAGGAATGGATCAACAATGTGTTTTTGGTTCCGAAAGAAATTCCCCAGGATAGCTCTATGGTTTTTTGTACAATCTGAAAGAAATAAATCTGGAATGGATTTCAAGTTGAAAGTACTCATCAATGGCACTACGCAACTCACTTCTTCATGTGAATACATGTTTCATTCGCAAAAAGAGATGGAACATATGCTTTGTTGTGATCTACAATGCAATGTGGAGGGTGTATTTTCAGAGAATGAGTTGAACTGGGTGGAGATTTTATGCGAGATGGAACATCTAATGCCCTGTGATTCTAAAAGGATCATGGCCCACCAGGACTGGACCACTAAGACGATTCTACTGTCTTCTCTCCTATATGTGTACCTAGAAAACGAAGAGAATGATTTCAACTTATCTGACAATCTTGATTTTCCTTCTGTTTTAACAAAAGTGAAATTTTCAGCTCTTATTCGTGGAATTAGAAAAATTCAAAGATGCAGGGAACACTTACAAGAGTATAGGCCTTCGACTACATCTATGCTAGATTTGAACGAACAATAA	3066	0.377	MEEQLPTLPSLSSFTCDWTYDVFLSFRGTDTRNNFTGNLYNSLQHQRGIQTFIDDEEIQKGEQITPTLLKAIKESRIFIAIFSPNYASSTFCLTELVTILECSKLQGRLFLPVFYDVDPSHVRNITGTYAKAFAKHEARFRDEKEKVQKWRDALHQAANMSGWHFKPGSEPEYKFIGNIVEEVSIKINRVPLHVANNPVGLESRMLEVTSLLGLQSDERVNMVGIYGIGGIGKSTTARAVHNLIADKFEVVCFLADIRERENHHGLVQLQETLLSEILGGKDFKLGDVNQGISIIKRRLQKKKVLLILDDVDKEKQLQALVGGHDWFGFGSRIIITTRNKHLLATHGVVKVYEIKQLENEKALDLFSWHAFKNKNIDPDYVNIAQRAVSYCHGLPLALEVIGSQLFGKSLAVWESSLDKYAGVLRKDIHEILKVSYDDLEEDVKGIFLDIACFFNSYDIGYVKEILYYHGFHVEGGIEELTDKCLMKIDVNGRVRMHDLIRDMGRGIVRRESTLEPGGRSRLWFSDDIVHVLEENTGTDRTEVIIVDLDKDRKVNWCGEAFGQMKNLRILIIRNAQFSSGPQILPNSLRVLDWCGYQSSSLPSIFNGKNLAVFETLNFLNFEGCKFLIEVPSLSSVPNLGALCLDDCTNLNRIHDSVGFLDKLVSLSAQDCTQLESLVPSINLPSLVTLDLSGCSRLESFPEVVGVMENIKDVYLDHTSIKTLPSTIGNLVGLQRLFLRGCFQLPCYLLPKVEIITTYGYGGFQSSEKEENMNPKVFANAMCVYNEYGKTFLNVYSSNNCSNDVIEVSSPLQNDRGKNLVIDEFETTLFRHREGIIKLGKLRRNGSTMCFWFRKKFPRIALWFFVQSERNKSGMDFKLKVLINGTTQLTSSCEYMFHSQKEMEHMLCCDLQCNVEGVFSENELNWVEILCEMEHLMPCDSKRIMAHQDWTTKTILLSSLLYVYLENEENDFNLSDNLDFPSVLTKVKFSALIRGIRKIQRCREHLQEYRPSTTSMLDLNEQ	1021

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g00372	1021	ProSiteProfiles	TIR domain profile.	18	187	IPR000157	GO:0007165
	Trre6g00372	1021	PRINTS	Disease resistance protein signature	681	697	-	-
	Trre6g00372	1021	PRINTS	Disease resistance protein signature	298	312	-	-
	Trre6g00372	1021	PRINTS	Disease resistance protein signature	391	405	-	-
	Trre6g00372	1021	PRINTS	Disease resistance protein signature	222	237	-	-
	Trre6g00372	1021	SUPERFAMILY	L domain-like	539	744	-	-
	Trre6g00372	1021	Gene3D	-	188	352	IPR027417	-
	Trre6g00372	1021	SMART	till_3	19	160	IPR000157	GO:0007165
	Trre6g00372	1021	Pfam	TIR domain	20	186	IPR000157	GO:0007165
	Trre6g00372	1021	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	20	744	IPR044974	GO:0006952
	Trre6g00372	1021	FunFam	Disease resistance protein (TIR-NBS-LRR class)	16	189	-	-
	Trre6g00372	1021	SUPERFAMILY	Toll/Interleukin receptor TIR domain	12	163	IPR035897	-
	Trre6g00372	1021	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	185	450	IPR027417	-
	Trre6g00372	1021	SUPERFAMILY	"Winged helix" DNA-binding domain	427	533	IPR036390	-
	Trre6g00372	1021	Pfam	NB-ARC domain	215	424	IPR002182	GO:0043531
	Trre6g00372	1021	Gene3D	-	356	440	IPR042197	-
	Trre6g00372	1021	Gene3D	-	16	187	IPR035897	-
	Trre6g00372	1021	Gene3D	Ribonuclease Inhibitor	544	753	IPR032675	-
	Trre6g00372	1021	SMART	AAA_5	219	358	IPR003593	GO:0016887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g00372	Trre-Chr6	2594974	2599549	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g00372	14	738	WRKY Transcription Factor Family	AT4G12020	30.559	5.85e-81	287

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g00372	-		-	mtr:11415136	1452.57