Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00359 ATGGAAAAGAGGGAATTTTCTGAAATGCTGTCAAAGATGAAAGTTTTGACCGACGAGGTTGTTTCTTTTGCTAAAAATTCTGAAATTGAGGTAGAGGCTTTTTCTGAGTTTGGCATGTTGGTTGAGAAATTGCCACCAATCTTGAATGAATTGAGTGATAATAGCACTGTCTTGGACAAGCCATCGATTCGAAAATCGTTGGAATCTCTTGAGAATGAGTTACGGCGTGCTAAAACTTTAACGAAAAGCTCGAATTTGAGACACCCTATTAAGCAAATTGAGGACATGACACATGATATCGGTCGGTCGTTGGGAGTTTTGCTTGTTGCAAGCCTTGAAGTTTCCATTGATTTTAGAGAAAAGATTGGTACATTGCAAAGACAGATGATGAATGCAAGGTTTGATGGCAGTTCAAGTATCACTTCGAGTCCAAAATCGGAGCTTTTCGCGAATGAAACGAGGACAGTTTGGGAAATAGAAGAGGAAATAGTTAATGTTCCCATTGATGATGTTATTTTGCAACTTAAGAATGGTAGTGATGAAGAATTTGCAGTTTCACTTCTGAGACTAAAGGAGTTCATGAGAAGTGAAAAATTGGACGGCGGTTTGATTAATGAGGAAGGAATTATCGCCATTCTTTTCAAGCGTCTAGTTTCGTGTAAGGCAGACAATAGGTTATCCATAATTCAACTGCTAAGAAGTATTGCCTTCGAAAGTGACGAGAAAAAGGAGAAGATGGTTGAGATTGAGTTTTTATCGGCAGTGGTGAAGTCTCTTACGAGGGATTCAGAAGAGAGGAGGGAAGCAGTCGGACTGTTGTTAGACCTCTCTAATGTTTCAGCAGTTCGAAGGCGGATTGGAAGAATTCAAGGGTGTATCGTTATGTTGGTCGCTATCCTTAATGGAGATGACCCTGTTGCTTCACATGATGCAGCAAAGTTATTGGATATTTTATCTAGTAATAACCAAAATGCACTTCATATGGCCGAGGCCGGCTATTTTAGGCCACTAGTTCAGTATTTGAAGGAAGGGTCTGACATGAACAAGATCCTAATGGCAACAGCACTTTCTAGGTTGGAACTCACTGATCACAGCAAACTTACCCTTGGAGAAGATGGAGCGGTCGAGCCCCTTGTCAAAATGTTTATCACTGGAAAACTTGAATCCAAGTTATCATCGTTAAACGCACTACAAAATCTGTCTACCTTAACCGAAAATGTGCAACGTTTGATTCGATCAGGAATTACAGGATCTTTGCTACAACTTCTTTTCTCTGTAACATCAGTTCTCATGACTCTAAGAGAGCCTGCGTCAGCTATTCTTGCAAGAATTGCTCAGTCCGAATCCATTCTCGTCAACGAAGATGTTGCTCAACAGATGCTTTCACTTTTGAATCTTTCAAGCCCTATAATTCAAGGTCACCTATTAGAAGCTCTAAATAGCATGTCTTCTCATCTTGGTGCATCCAAAGTGAGGAGAAAAATGAAGGAAAAAGGTGCACTTCAACTTCTTTTACCTTTTCTTAAGGAAAGTAACACCAATATCAGATGTAAGGTCTTGAATTTGCTATGCACACTCTCTAAAGATATAACCGATGAGTTGACCGAATATCTTGATGAAACTCATCTTTTCAACATTGTTAATATTGTCTCATCATCCACATCAGAGAGCGAAAAAGCGGCTGCGGTTGGCATACTGAGTAATCTTCCAGCTAGCGATAAAAAAGTAACCGACATACTAAAGAGGGCAAATTTGCTACCGATTTTGATATCCATTTTGTATACTTGCAATGCAAGTAAATCGCCACCAGCAAATAGCTTAACCGAGAATGCTGCCGGTGTTATAAACCGCTTCACGAATTCATCTGACAAGAAACTACAACTTGTTTCAGTACAACACGGGGTGATTCCTTTGCTCGTAAAATTGCTCTCAACAAGTTCACCAATCACAAAATCAAGGGCTGCAAACTCTTTAGCTCAATTATCACAAAATTCTCTTTCTCTTAGGAAATCTAGAAAGGCAAGGTGGTTATGTGTTCAACCTTCATCGAATGCATATTGTGAAGTTCATGACGGATATTGCTTTGTCAATAGCACATTTTGTTTGGTCAAAGCAGGCGCAGTTTCTCGACTTATAGAAATATTAGAAGATAAAGAGAAGGAAGTAGTTGAAGCTTCTCTTGTTGCGCTTTCGACTCTTTTGCAAGATGAAATTTGGGAAGGTGGTGTGAGTTTCATTGAGAAGTTATCAGGTGTGCAAGCTATTATAAAAAGTCTAGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAAAATATTTAAGGTTGAAGAACATAGAGTAAAATATGGTCAATATGCTCAAGTGGTTCTTATTGATTTGGCACAAAAAAGTGATTCTAGATTGAAGTCAGCAGTTGCAAAAGTATTAGCTGAGCTTGAGCTTTTGCAAGCTCAATCAAGTTACTTTTGA 2484 0.3909 MEKREFSEMLSKMKVLTDEVVSFAKNSEIEVEAFSEFGMLVEKLPPILNELSDNSTVLDKPSIRKSLESLENELRRAKTLTKSSNLRHPIKQIEDMTHDIGRSLGVLLVASLEVSIDFREKIGTLQRQMMNARFDGSSSITSSPKSELFANETRTVWEIEEEIVNVPIDDVILQLKNGSDEEFAVSLLRLKEFMRSEKLDGGLINEEGIIAILFKRLVSCKADNRLSIIQLLRSIAFESDEKKEKMVEIEFLSAVVKSLTRDSEERREAVGLLLDLSNVSAVRRRIGRIQGCIVMLVAILNGDDPVASHDAAKLLDILSSNNQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLTLGEDGAVEPLVKMFITGKLESKLSSLNALQNLSTLTENVQRLIRSGITGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNSMSSHLGASKVRRKMKEKGALQLLLPFLKESNTNIRCKVLNLLCTLSKDITDELTEYLDETHLFNIVNIVSSSTSESEKAAAVGILSNLPASDKKVTDILKRANLLPILISILYTCNASKSPPANSLTENAAGVINRFTNSSDKKLQLVSVQHGVIPLLVKLLSTSSPITKSRAANSLAQLSQNSLSLRKSRKARWLCVQPSSNAYCEVHDGYCFVNSTFCLVKAGAVSRLIEILEDKEKEVVEASLVALSTLLQDEIWEGGVSFIEKLSGVQAIIKSLEVGDAKVQEKALWMLEKIFKVEEHRVKYGQYAQVVLIDLAQKSDSRLKSAVAKVLAELELLQAQSSYF 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00359 827 Coils Coil 60 87 - -
Trre6g00359 827 SUPERFAMILY ARM repeat 367 782 IPR016024 -
Trre6g00359 827 SUPERFAMILY ARM repeat 162 487 IPR016024 -
Trre6g00359 827 Gene3D - 677 825 IPR011989 -
Trre6g00359 827 Gene3D - 168 484 IPR011989 -
Trre6g00359 827 Gene3D - 485 676 IPR011989 -
Trre6g00359 827 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 172 827 - -
Trre6g00359 827 SMART arm_5 239 278 IPR000225 GO:0005515
Trre6g00359 827 SMART arm_5 573 620 IPR000225 GO:0005515
Trre6g00359 827 SMART arm_5 321 361 IPR000225 GO:0005515
Trre6g00359 827 SMART arm_5 695 735 IPR000225 GO:0005515
Trre6g00359 827 SMART arm_5 362 402 IPR000225 GO:0005515
Trre6g00359 827 SMART arm_5 403 446 IPR000225 GO:0005515
Trre6g00359 827 SMART arm_5 623 663 IPR000225 GO:0005515
Trre6g00359 827 SMART arm_5 488 528 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00359 Trre-Chr6 2537400 2540060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00359 124 778 U-box Gene Family AT1G68940 26.508 5.89e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00359 K08332 - gmx:100791453 1251.5