Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00353 ATGTTTCCTTCTTCCAAGGGAGTTTGTACTTATGATGTTTTCCTCAGTTTCAGAGGAGAAGATACTCGCTATGGTTTCACTGGAAATCTCTACAATGCTTTACACCAAAATGGAATCAAAACTTTCATTGATGATGAAACGATTAAGAGAGGAGAACAAATTTCACCTACTATTTTCAAAGCAATTGATGAGTCTAGAATGGCTATAATTGTTTCCTCCAAAAACTATGCATCCTCAAAATACTGTCTTCAAGAACTTGCCAAAATCATTGGATGTTTCAAAGACAAGGAACTAGCTGTGTTTCCAGTGTTTTACAAAGTTGATCCATCAGAGGTTCGAAATCAGACGGGGAATTATGGACAACAATTGGCTAAGCATGAGGAGAAAATGAAGGAAGAAGTGCAAGGTTGGAGGTTCGCTTTACGTGAAGCTGCCAATCTGGCAGGGTGGTGTTTTAGAGATGGATACGAATATGAATATGAATTTATCAAAAGGATTGCTGACACGGTGTGCAGCACATCAAAACAGATCCTTTCACATGTTGATGATTATGCAGTTGGACTTGAGTCACGCGTATCTAAAATACTATACCGTTTGCAAATGCCTGATTCTAAAGTCATCGTGATAGGAATTTGTGGTGTTGGTGGAATAGGCAAAACTACTTTGGCACGAGCTGTGTATGATTCCATTGGCAAACAATTTGAAGGTCTGTGCTTTCTCAATGATGTCAGAGAAAATTCAACCAAATATGGATTGGCATATCTACAACAGGTAATTCTTTCTGATACAGTTGGTGAGAATATCAAGCTGCGTAATGAGAATGAAGGAATTTCTATCTTAATCAGAAATTTGCAAAGTAAAAGGATTCTTTTGATACTTGATGATGTTGACAAGTTGGACCAATTGAAGAATTTAGCAGGAGAACCCAGTTGGTTTGGTTGGGGGAGTAGAATTATCATAACTACTAGGCATAAAGATATTCTAACTTCTCATGGAGTTGGAAATATATATGATGTACCTAGTTTGGATTATTTTGAAGCTCTTCAACTTTTAAGTTCCATTGCATCAAAAAGACTTAATCCTAAAGGAGTCTGGGAACGTGTTATCAGCTATTCCCACGGCATTCCGTTGGTTTTAAAGGTTATAGGTTCTGATTTATTAGAAAACTCAACAGATGAAGGGGAGATTTCATTAGACAGATATGAAAAAGTCTGCAATGAAGAAACTCAGAGTATACTTGAAGTGAGTTACAATAGTTTGAATGAATGCGAGAAGAGAATTTTCATTGACATTGCGTGTTTCTTCACTGGAGAGCCGTTTTCATATGTCAAAGAAATACTATCTGCTTGTGGTATCTATACAAAATATGGTATTGACAGACTTAAGGATAGATCCCTCATATCAATCACTCCCGGTGGGAACTTGATGGTGCATGATCATATAATAGACATGGCTATGAATATAGTACACCAAGAATCACCAATGAATCCTTGCAAACGAAGTAGGTTATGGTTACCTGAGGATGTTCTTCAAGTTTTAGATGAAAATGCGGTAAGAAATATTTTTATTGGTTTTATTTACTTTCCAGTTTTTAAATGA 1599 0.3652 MFPSSKGVCTYDVFLSFRGEDTRYGFTGNLYNALHQNGIKTFIDDETIKRGEQISPTIFKAIDESRMAIIVSSKNYASSKYCLQELAKIIGCFKDKELAVFPVFYKVDPSEVRNQTGNYGQQLAKHEEKMKEEVQGWRFALREAANLAGWCFRDGYEYEYEFIKRIADTVCSTSKQILSHVDDYAVGLESRVSKILYRLQMPDSKVIVIGICGVGGIGKTTLARAVYDSIGKQFEGLCFLNDVRENSTKYGLAYLQQVILSDTVGENIKLRNENEGISILIRNLQSKRILLILDDVDKLDQLKNLAGEPSWFGWGSRIIITTRHKDILTSHGVGNIYDVPSLDYFEALQLLSSIASKRLNPKGVWERVISYSHGIPLVLKVIGSDLLENSTDEGEISLDRYEKVCNEETQSILEVSYNSLNECEKRIFIDIACFFTGEPFSYVKEILSACGIYTKYGIDRLKDRSLISITPGGNLMVHDHIIDMAMNIVHQESPMNPCKRSRLWLPEDVLQVLDENAVRNIFIGFIYFPVFK 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00353 532 Pfam NB-ARC domain 189 393 IPR002182 GO:0043531
Trre6g00353 532 Gene3D - 5 171 IPR035897 -
Trre6g00353 532 PRINTS Disease resistance protein signature 208 223 - -
Trre6g00353 532 PRINTS Disease resistance protein signature 283 297 - -
Trre6g00353 532 PRINTS Disease resistance protein signature 372 386 - -
Trre6g00353 532 ProSiteProfiles TIR domain profile. 9 170 IPR000157 GO:0007165
Trre6g00353 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 431 IPR027417 -
Trre6g00353 532 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 513 IPR044974 GO:0006952
Trre6g00353 532 Gene3D - 172 333 IPR027417 -
Trre6g00353 532 Gene3D - 341 421 IPR042197 -
Trre6g00353 532 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 176 - -
Trre6g00353 532 SUPERFAMILY "Winged helix" DNA-binding domain 409 513 IPR036390 -
Trre6g00353 532 Pfam TIR domain 11 176 IPR000157 GO:0007165
Trre6g00353 532 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 150 IPR035897 -
Trre6g00353 532 SMART till_3 10 147 IPR000157 GO:0007165
Trre6g00353 532 SMART AAA_5 205 343 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00353 Trre-Chr6 2477587 2480879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00353 186 515 WRKY Transcription Factor Family AT5G45050 33.333 1.57e-45 170