Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00348 ATGGCTGAGCTGGTTGCTGCTGCATTTCTTTCGTCTTTCTTTGAAGTGATTCTCGAGCGGTTGGCTTCACGTGATTTCCATGACTACTTCAACAGAAACAAACTTGATGGTGGATTTGTGGACAAACTTGGCATTACACTCAATTCTATAAATCAAGTTCTGGAAGAAGCAGAAAAAATGCAGTATAAAAGCACATATGTAAAGAAATGGCTTGATGATCTTAAACATGCTGTATATGAGGCGGACCAAATTTTCGATGAGATTGCTACTGATGCACAACTGAATAAGCTGAAAGCTGAATCTGATTCTGTTAACAGCTCAACATTTGAATCTAGGATCAAAGAACTAATAGAGATGGTAGAACTTCTTGTGAAGCAAAAGGAAATATTGGGATTGAAAGGAGGTGCTCGGTGTGCTAGTAATGAAGGTGTTGACATCAGCTGGAAATCGTTGAAAAAATTGCCAACTACAATGCCAGATGACAAAGCGAATCTACATGGTAGAGATGTTGAGAAAGAGGAAATAATCAATTTTTTACTTTCAGATAATGATGGTGGCAACCGGGTACCCGTACTCAGCATAATCGGTTTAGGTGGGATGGGTAAGACCACCCTTGCTGAGGTTGTGTATAATGATGATAGGATTAGGGACCATTTTGATCGTAAAACTTGGGTCTATGTTTCAGAATACTTTGATGTTGTTCGACTTACCAAAGAAATAATTAGTAGGTTTTGGTTCGATGATTCTTTAGCAGATGGAGAGGACTTGAATCTACTTCAACAACAACTGCATCAAGGAATAGCAGGCAAGAGATATTTGCTTGTTCTAGACGTTGTTCGGAATGGCAAAGATGAATGTTGGGAGCAGTTACTACTTCCCTTTAATCATGGATCTTTTGGAAGTAAGATTATTGTGACAACACGTGACAAAGAGGTAGCATCGGTAATGAAATCTGCTCAGATACTTCATTTGAAGCAACTGGAGGAAAGTGATTGTTGGAGTTTATTTGTGAGGCATGCTTTTTACGGCAAAAATGTAAGTGGATATCCAAATCTTGAATCAATTGGAAGGAAAATTGTAGACAAGTGTGGAGGGTCGCCTTTAGCTGTAAGAACATTGGGGGGTCTCTTGCGAATGAAATTTTCTCCAGATGAATGGGTCAAGATATTGGAGACAGACATGTGGCTTTTATCGGATGAGGACAAGGACAACAACGTTAACATTTACCCGATATTGGCACTGATTTATCATAACCTTCCTTCCAACGTGAAGCGATGTTTTGCTTATTTTTCCACATTTCCCAAAGTTAATCGGTTTTACAAGGATCAATTAATCAAGCTTTGGATGGCAAATGGGTTACTGAAGTGTTGTGGAACAGACAAGAGTGAAGAAGAGTTGGGTAATGAATTCTTTGATTATCTCGTGTCAATTTCATTTATACAACAATCATTATATCCAGAGAAGGATAATAAGTACTACTTTATCATACATGATCTTGTCATTGATTTAGCACGATCAGTGTCAGGAGAATTTTCTTTGCGGATAGAAGGTGATAGGGTGCAAGATATCCCTGAAAGAACACGCCATATTCGGTGCACTCTTGATTTGAAATATGGTGATCGAAAATTAGAGAAGATTTATAAGATTAAGGGTTTAGACAATCTGACGGTAGAAGAACAAGATTATGATGACCAATGCTTCAAGATATGCAAAAATGTGCAAATTGATCTATTTTCAAGTCTAAAATATTTGCGTATGTTAACATTCTCTTATTGTTATAATCTCTCGGAGCTAGCTGATGAGATAAGCAACTTAAAGCTTCTGCGTTATCTAGACCTTTCTTACACTGGGATTACAAGCCTACCTGATTCCATTTGTATGCTGTACAATTTGCAGACACTCTTATTGCTAGGTTGTAAATTGACTGAGCTCCCTGCAGATTTTTACAAACTCGTCAATTTACGTCATCTTAATCTAGAAAGAACTCTTATCTCGAAGATGCCAAAGCAAATACAAAAGTTAACCCATCTTCGGACGTTGACGGATTTTGTTGTGGGAGAGCATAGCGGGTCTGATATTAAGGAGTTGGCAAAACTCAACCATCTTCGAGGGTCACTTTGTATTTTGAACTTGGAAAATGTCACCGATCTTGCAGATGCTGCGGAAGCAAATTTGAAAGATAAGATTCATTTGGAACAATTGCATATGAGGTATGGTTACAGAAGAAAAACGGATGGTTCAATTGTTGAGAGAGATGTCTTGGAGGTTCTCGAACCAAATAGCAACCTGAATAGGCTCATCATCGAGGACTATAGAGGCACTAGCTTTCCACGTTGGCTCGTGGAATGTTATTTACGCAATTTAGTATCCCTTGAACTGAATAGATGTGAATTTTGTTCCCAGTTTCCACCGCTTGGGCAGCTCCCGTCTCTTAAGGAGCTTGATATTTCAGAATGTGATGGAATAGAGATCATTGGTGAAGAGTTTTACGGCTATAATTCATCAATTATTCCATTCAGTTCCCTTGAAATTTTGAGATTTGATAACATGTACGGTTGGAATGAATGGTTATGTCCTAAAGGCTTCCCTTCTCTTAAAGAACTTTTTATAACAGAATGTCCCAAGTTGAAAAGGGCATTGCCTCAACATCTTCCTTGTTTGGAACGCTTGGTGATTCATGGATGCCCAGAGTTGGAGGCTTCGATTCCTGCTAATATCAAAGCGCTAGAGCTAGCCGGATGTGTAAACCTTTTCATAAATGATTCACCATCCAGCTTAAAAAAGGCCTGTCTGGCGGAACTCGGCTGTAATTCACTTCGCACTCTGTCCATAACAGGATGGTGCTCCTCGTCCTTGCCTTTTGCATTAAACTTGTTAGCCAATCTTCGTTCTCTACATTTGTACGATTGCCCGCAGCTCAAATCATTTCCACATAGAAGTTTATCGTCGAGCCTGAGTACCCTCCAAGTAAACAAATGCCCTAAACTGATTGCATCGAGAGAGGAGTGGGGTTTGTTCGAACTCAATTCTCTGAAAGAATTTAGACTTAGTGATGACTTTGAAAACGTTGAGTCCTTCCCGGAGGAAAATCTACTGCCACCAACTCTTACCTCTCTCCGTTTGGAAAATTGTTCAAAGCTGAGAATAATAAATTACAAAGGTCTTCTCCATCTCAAATCTCTCAGACTCTTTGTCATTGAAATTTGTCCTTGTCTTGAACGATTGCCGGAGAAGGTTCTTCCGAACTCACTTTCTACTTTGTACATTTGTGAGTGTCCATTACTTAAGCAGCGGTACCAAAAGGAGGAAGGAGAACATTGGCACAAAATTAGTCACATCCCTGATGTATTTATTTATTGA 3360 0.392 MAELVAAAFLSSFFEVILERLASRDFHDYFNRNKLDGGFVDKLGITLNSINQVLEEAEKMQYKSTYVKKWLDDLKHAVYEADQIFDEIATDAQLNKLKAESDSVNSSTFESRIKELIEMVELLVKQKEILGLKGGARCASNEGVDISWKSLKKLPTTMPDDKANLHGRDVEKEEIINFLLSDNDGGNRVPVLSIIGLGGMGKTTLAEVVYNDDRIRDHFDRKTWVYVSEYFDVVRLTKEIISRFWFDDSLADGEDLNLLQQQLHQGIAGKRYLLVLDVVRNGKDECWEQLLLPFNHGSFGSKIIVTTRDKEVASVMKSAQILHLKQLEESDCWSLFVRHAFYGKNVSGYPNLESIGRKIVDKCGGSPLAVRTLGGLLRMKFSPDEWVKILETDMWLLSDEDKDNNVNIYPILALIYHNLPSNVKRCFAYFSTFPKVNRFYKDQLIKLWMANGLLKCCGTDKSEEELGNEFFDYLVSISFIQQSLYPEKDNKYYFIIHDLVIDLARSVSGEFSLRIEGDRVQDIPERTRHIRCTLDLKYGDRKLEKIYKIKGLDNLTVEEQDYDDQCFKICKNVQIDLFSSLKYLRMLTFSYCYNLSELADEISNLKLLRYLDLSYTGITSLPDSICMLYNLQTLLLLGCKLTELPADFYKLVNLRHLNLERTLISKMPKQIQKLTHLRTLTDFVVGEHSGSDIKELAKLNHLRGSLCILNLENVTDLADAAEANLKDKIHLEQLHMRYGYRRKTDGSIVERDVLEVLEPNSNLNRLIIEDYRGTSFPRWLVECYLRNLVSLELNRCEFCSQFPPLGQLPSLKELDISECDGIEIIGEEFYGYNSSIIPFSSLEILRFDNMYGWNEWLCPKGFPSLKELFITECPKLKRALPQHLPCLERLVIHGCPELEASIPANIKALELAGCVNLFINDSPSSLKKACLAELGCNSLRTLSITGWCSSSLPFALNLLANLRSLHLYDCPQLKSFPHRSLSSSLSTLQVNKCPKLIASREEWGLFELNSLKEFRLSDDFENVESFPEENLLPPTLTSLRLENCSKLRIINYKGLLHLKSLRLFVIEICPCLERLPEKVLPNSLSTLYICECPLLKQRYQKEEGEHWHKISHIPDVFIY 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00348 1119 Gene3D - 416 507 IPR036388 -
Trre6g00348 1119 Gene3D - 149 322 IPR027417 -
Trre6g00348 1119 Pfam NB-ARC domain 171 416 IPR002182 GO:0043531
Trre6g00348 1119 Gene3D Ribonuclease Inhibitor 548 929 IPR032675 -
Trre6g00348 1119 ProSiteProfiles Leucine-rich repeat profile. 607 628 IPR001611 GO:0005515
Trre6g00348 1119 PANTHER DISEASE RESISTANCE PROTEIN RP 54 895 IPR044974 GO:0006952
Trre6g00348 1119 Gene3D - 17 129 - -
Trre6g00348 1119 Gene3D - 326 415 IPR042197 -
Trre6g00348 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 429 IPR027417 -
Trre6g00348 1119 Gene3D Ribonuclease Inhibitor 934 1113 IPR032675 -
Trre6g00348 1119 SMART LRR_typ_2 628 650 IPR003591 -
Trre6g00348 1119 SMART LRR_typ_2 605 626 IPR003591 -
Trre6g00348 1119 SMART LRR_typ_2 651 673 IPR003591 -
Trre6g00348 1119 SMART LRR_typ_2 959 983 IPR003591 -
Trre6g00348 1119 Pfam Rx N-terminal domain 9 99 IPR041118 -
Trre6g00348 1119 PRINTS Disease resistance protein signature 363 377 - -
Trre6g00348 1119 PRINTS Disease resistance protein signature 266 280 - -
Trre6g00348 1119 PRINTS Disease resistance protein signature 806 822 - -
Trre6g00348 1119 PRINTS Disease resistance protein signature 191 206 - -
Trre6g00348 1119 SUPERFAMILY RNI-like 834 1095 - -
Trre6g00348 1119 SUPERFAMILY L domain-like 496 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00348 Trre-Chr6 2410648 2414120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00348 192 507 WRKY Transcription Factor Family AT5G45050 25.305 5.18e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00348 - - mtr:11411709 1131.7