Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00334 ATGTACACGTATGTTTTATTCCTGATTGATTGTAATGTAATCCTTATCTTTTCATTCGCGAAGGGGCTGGTGGTGGTTGGACATACAAGTATGGCATCTAGTAATCCATTCTTCGATGATATGCGTAGTAGATCTGGGGTTGACCCTCCTCAAACTGAAGAGTCAACAGAAATTCCTGAACTCATAAATGATCCTTTACAGACTGTTGTTAAACCTAATGGGACTGTTTCGAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTGTGCTTGAATGCTATGTACCCTCCAATTCACCAGTGCTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCAAGAGTTCATGATCGGTGCCCTACTTGTCGGCATGAGCTCGGCAATATTAGATGTCTGGCATTGGAGAAGGTGGCTGCATCTTTAGAACTTCCTTGTAAATATCAAGGTTTTGGGTGCATAGGCATATACCCATATTACAGCAAGCTAAAACACGAGTCTCAATGTGTGTTTAGACCTTATAACTGTCCATACGCTGGTTCAGAATGTTCTGTCGTCGGTGATATACGTTACCTGGTTGCACACCTGAAAGATGATCATAAAGTGGACATGCATAGTGGTTGCACTTTTAATCATCGTTATGTCAAATCGAATCCACAAGAAGTTGAAAATGCCACGTGGATGCTAACGGTTTTTAGTTGCTTCGGTCAGTATTTTTGTCTGCATTTTGAAGCATTTCAACTGGGAATGGCTCCTGTCTACATAGCATTTTTGCGGTTCATGGGCGATGATAATGAGGCAAAGAACTATACCTACAGTCTCGAGGTAGGTGGAAATGGGAGGAAGATGACCTGGCAAGGTGTGCCTAGAAGCATCAGGGAAAGCCACCGCAAGGTTCGCGACAGTTTTGACGGTCTCATAATTCAAAGGAACATGGCTCTCTTCTTTTCTGGGGGTGACAGGAAGGAGTTGAAACTACGAGTTACCGGAAGGATTTGGAAAGAACAATGA 1005 0.4328 MYTYVLFLIDCNVILIFSFAKGLVVVGHTSMASSNPFFDDMRSRSGVDPPQTEESTEIPELINDPLQTVVKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCVFRPYNCPYAGSECSVVGDIRYLVAHLKDDHKVDMHSGCTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMTWQGVPRSIRESHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00334 334 SUPERFAMILY RING/U-box 78 126 - -
Trre6g00334 334 FunFam E3 ubiquitin-protein ligase SINAT3 138 194 - -
Trre6g00334 334 CDD RING-HC_SIAHs 84 122 - -
Trre6g00334 334 ProSiteProfiles Zinc finger RING-type profile. 86 122 IPR001841 -
Trre6g00334 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 192 IPR013083 -
Trre6g00334 334 CDD Sina 200 328 - -
Trre6g00334 334 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 68 333 - -
Trre6g00334 334 Pfam Seven in absentia protein family 128 327 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre6g00334 334 FunFam E3 ubiquitin-protein ligase SINAT5-like 195 327 - -
Trre6g00334 334 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 193 327 IPR008974 GO:0005515
Trre6g00334 334 SUPERFAMILY TRAF domain-like 139 331 - -
Trre6g00334 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 137 IPR013083 -
Trre6g00334 334 FunFam E3 ubiquitin-protein ligase SINAT5-like 44 137 - -
Trre6g00334 334 ProSiteProfiles Zinc finger SIAH-type profile. 139 199 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00334 Trre-Chr6 2325622 2327390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00334 77 334 C3H Transcription Factor Family AT2G41980 79.457 8.04e-160 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00334 K04506 - gmx:100793457 602.053