Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00323 ATGTCTACCAACGATCCTTTCTCAAACCACAAACTCTGTGGTTTCCTCTCTACGGTTCTCACTTCGCATCATTTCAACGACGCGCAATTCAACGACCGATGCGAGATTTTCAACGACGGAAATACTATTGCGTTTCGGACTCAAAACGGTGTCGTTTTAAGTCCGATTGTCGATTCGGTACAATGCGGGAGTCCGAATGGGAAGAAGAAAATTGGAATGGTGAAGGGGAGCTTTAGCGTTGTTCATCAGCTTCATGCTTTGGTTGTTCGTAAATGTTTGGATATTGATGCTCGCGTTTTGTGTGTTGTGGAGGTTGAAGCTAGGGTTAGGGTTGTTGTTCTTGTTGATGTTTATCTTCCGGTTCAGGTTTGGAGTGGATGGCAGTTTCCGAAATCCGGTTCTGTTGCCGGTGCTGTTTTTCGCCATTTGAGCTGTGATTGGGATGAGAGAAGTTCAATGCTTTCTGATCCAGACTACTGTAGGAAGACTCATGGAGAAAATGATAGCATTTGGAACCTTTCTGATTGTCATGCACTTGGTTGCAAGCTCCATTCCCCTGTGAGAGGTGCTTCAAGGGAAAGGTTATTTGAACTTCATGAAATTTTTAAGACAGTACCTTCACCTTGTGGAGAACAGCAGAAGTTTATTATTTCCAAGATAATACCGAAGGACCACACCTGCAGATCTGGGATTTGGGAGATCTCTGATGATATTTTAACTAAAATTCTATATTCCCTGGGCCCTTTGGACCTCACTAGGATTTCTGCAACGTGTCATCATCTAAGATCCTTGGCTGCTTCAGTAATGCCCTGCACAAAGTTAAAACTGTTTCCTCATCAGCAGACAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTAATCTTTTGCCACATCCTTTATATATAACTCTTTCAACTTATGATGGCTTTAGTTTCCATGTTAATACTGTATCTGGTGATATAGTCACCGGGGAAGCTCCCACCATCAAAGATTTCCGTGGAGGAATGTTTTGTGACGAACCTGGCTTGGGTAAGACTGTAACAGCTCTTTCTCTTATCACGAAGACACAAGGTACATTGGCGGATCCACCAGATGGGCCACAAGTAGTTTGGTGTCAACATAACGCTGCCAAATGTGGCTATTATGAGATCAGTGAGAGGGACGTGTGCCAAGATACAGGTAGAAATAATGAGAACCATGTGTACTCCTCTGGAAGAGCCAAATTGTTAACTCCTGGTCAGGAAATCACTAAACCTCATGATTCAGGTTCTGTAGGAGAATACAAATCACCTGTAGATGCTTGTTTTGAGGAATATACGCCTGCTAGTCGGCGCACTAGAAGCTTGAGTTGCGTAAAGAAAACTCTAAATTTCACGAATGACGAGGAAGCTATGATTTCCAATGAAACGAGAGTTGGTAAAGGACCAATTATAACAAAACATGCATCAGATGTTGCATCCCATGTGTCTCAAAACAAGCTTGTTGATACTTCATACGGTTGTGAACAGAGTTACAAGTGGCACGGGAAGCGTAAACGTAAAGTTGATTGTTTGGAATACAGTGATACATGGATTCAGTGTGATGCTTGTCACAAATGGCGAAAGCTTGCAGATAATAATATGGCTAATTCTAGTGCAGCATGGTTTTGTACTATGAACTCTGACCCTTTGTATCAGAATTGTAGAGTCCCCGAACAGTATATTCGGAATAGCTGTAAGATAACTTACTTACCAGGATTTCACTTGAAAGGAACTCCTGGAGGTGAGAAACAAAACGTTTCATTTTTCACTAGTGTCCTTAAGGAGCACTACTCATTGATAAATGCTCAGACAAAGAAGGCTCTGACTTGGTTGGCCAAAATTACGATGGACAAGCTTGCAATAATGGAAACAAATGGTATACGTGGTCCTATTTTAAACAATTGCACTTCGTCTAATGGGACTTTGAATCCATACCACAAAATATTTCAAGCATTTGGCCTTGTAAAGAGAGTAGAGAAAGGTGTATGCAGGTGGTTTTACCCAAAAAATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTTTCTGTGTGCCACTAGATTTTGTTAGGTTATACTTGTCAAGAGCAACCCTGGTAGTTGTTCCAGCAAACCTGGTCGACCATTGGAAAACACAAATAGAAAAGCATGTTAAGCCTGGTCAATTGCTTGTTTATGTTTGGAACGATCATCGGAAACCATCTGCACACTCTCTTGCCTGGGATTATGATGTTGTCATCACTACATTCAGTCGTCTGAGTGCAGAGTGGGGCCCACGCAAGAGGAGTGCTCTAATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGCTCAAGCCTGAGTTTAACAAACAAGTTGCAAATGGCTATTTCATTGGTTGCATCTAATCGATGGATACTAACTGGAACGCCAACACCTAACACTCCTAACAGCCAACTTACGCATCTACAACCATTGCTAAGGTTCCTTCACGAAGAAGCATATGGACTGAATCAAAAGTCATGGGATGCTGGCGTGCTTAGGCCATTTGAGGCAGAGATGGAAGAAGGTCGGTCTCGTCTGTTGAATTTACTTCAGAAATGCATGATTAGTGCTAGAAAGGTGGATTTGCAAAGTATTCCACCATGCGTCAAGAAAGTTGTTTTACTAGATTTTAGTGAGGAACATGCTAGAAGTTACAATGAATTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGACCCTTCACATGTGGAGAGTCTACTAAATCCAAAACAGTGGAAATTTCGGAGCGAAACTATAAAAAATGTGCGGCTTTCATGCTGTGTTGCTGGGCATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAACAATGGATTTGTTAGTACAAAATGGTCTAGATTCTACTTCAGGGGAGTATACCTCCATAAAATATAGTCTCGTGTATGGTGGCCACTGTGTCAGGTGCAAAGAATGGTGCCGACTTCCTCTCATTACACCATGTCGACATCTCTTGTGCCATGAGTGTGTTTCCATAGACAAGACAAAGTGTACGTATCCTGGCTGTGATAACTTATATGAGATGCAGAGTCCTGATACAATGGCACGGCCAGAAAATCCTAACCCAAAGTGGTCTGTCCCCAAAGATCTTATTGAGTTACAACCTTCATATAAACAGGATAAGTGGGATCCTGATTGGCAATCAACGTCTAGTAGTAAAGTTGCATATCTCGTCCAGAGGTTGAAAGCTTTGCAAGGAACCAATGAAGATATGAGTTCATACACGGACAATAGCAATAATGAGATGCATATTGAGAATAGTTTTCCTTTGCACACAGGGCATGCTGAATCATCATTCCAGGAATGTTCTACGAGTAGTATTAACACCAATGTGGTCCCTGAAAAAGTTTTGATATTTTCTCAGTTTCTTGAGCATATACATGTCATTGAACAGCAGTTGGCTGTTAATGGTATCAAATATACTGGAATGTATAACCCAATGCATTCTAGTAACAAGAAGAAGTCATTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGGAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACGCATGTATTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCCCATCGCATGGGTGCTTCTCGTCCTATTCACGTGGAAACATTGGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGATAAACGTAGAAGATTTCATAATAAAGATGTTGTCAAATCTGAAGATGGTGGGGGACGAGGACATCGATCATTGCATGATTTTGCTGAAAGCAATTATCTACTGGAACTTAGATTTGTATAA 3933 0.4152 MSTNDPFSNHKLCGFLSTVLTSHHFNDAQFNDRCEIFNDGNTIAFRTQNGVVLSPIVDSVQCGSPNGKKKIGMVKGSFSVVHQLHALVVRKCLDIDARVLCVVEVEARVRVVVLVDVYLPVQVWSGWQFPKSGSVAGAVFRHLSCDWDERSSMLSDPDYCRKTHGENDSIWNLSDCHALGCKLHSPVRGASRERLFELHEIFKTVPSPCGEQQKFIISKIIPKDHTCRSGIWEISDDILTKILYSLGPLDLTRISATCHHLRSLAASVMPCTKLKLFPHQQTAVEWMLHRERNANLLPHPLYITLSTYDGFSFHVNTVSGDIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLITKTQGTLADPPDGPQVVWCQHNAAKCGYYEISERDVCQDTGRNNENHVYSSGRAKLLTPGQEITKPHDSGSVGEYKSPVDACFEEYTPASRRTRSLSCVKKTLNFTNDEEAMISNETRVGKGPIITKHASDVASHVSQNKLVDTSYGCEQSYKWHGKRKRKVDCLEYSDTWIQCDACHKWRKLADNNMANSSAAWFCTMNSDPLYQNCRVPEQYIRNSCKITYLPGFHLKGTPGGEKQNVSFFTSVLKEHYSLINAQTKKALTWLAKITMDKLAIMETNGIRGPILNNCTSSNGTLNPYHKIFQAFGLVKRVEKGVCRWFYPKNLNNLTFDVAALGMAFCVPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVKPGQLLVYVWNDHRKPSAHSLAWDYDVVITTFSRLSAEWGPRKRSALMQVHWFRIILDEGHTLGSSLSLTNKLQMAISLVASNRWILTGTPTPNTPNSQLTHLQPLLRFLHEEAYGLNQKSWDAGVLRPFEAEMEEGRSRLLNLLQKCMISARKVDLQSIPPCVKKVVLLDFSEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSETIKNVRLSCCVAGHIKVTHAGEDIQETMDLLVQNGLDSTSGEYTSIKYSLVYGGHCVRCKEWCRLPLITPCRHLLCHECVSIDKTKCTYPGCDNLYEMQSPDTMARPENPNPKWSVPKDLIELQPSYKQDKWDPDWQSTSSSKVAYLVQRLKALQGTNEDMSSYTDNSNNEMHIENSFPLHTGHAESSFQECSTSSINTNVVPEKVLIFSQFLEHIHVIEQQLAVNGIKYTGMYNPMHSSNKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLEFLQDADKRRRFHNKDVVKSEDGGGRGHRSLHDFAESNYLLELRFV 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00323 1310 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1140 1282 IPR001650 -
Trre6g00323 1310 Pfam CW-type Zinc Finger 524 567 IPR011124 GO:0008270
Trre6g00323 1310 ProSiteProfiles Zinc finger CW-type profile. 519 570 IPR011124 GO:0008270
Trre6g00323 1310 Pfam Helicase conserved C-terminal domain 1142 1243 IPR001650 -
Trre6g00323 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 357 IPR027417 -
Trre6g00323 1310 SMART helicmild6 1161 1243 IPR001650 -
Trre6g00323 1310 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 112 1272 - -
Trre6g00323 1310 CDD F-box_SF 233 265 - -
Trre6g00323 1310 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 672 837 IPR014001 -
Trre6g00323 1310 ProSitePatterns Zinc finger RING-type signature. 1015 1024 IPR017907 -
Trre6g00323 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 779 1270 IPR027417 -
Trre6g00323 1310 SMART ultradead3 272 848 IPR014001 -
Trre6g00323 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 701 877 IPR027417 -
Trre6g00323 1310 CDD DEXDc_SHPRH-like 701 878 - -
Trre6g00323 1310 SUPERFAMILY F-box domain 225 267 IPR036047 GO:0005515
Trre6g00323 1310 Pfam SNF2-related domain 279 935 IPR000330 GO:0005524|GO:0140658
Trre6g00323 1310 CDD SF2_C_SNF 1148 1253 - -
Trre6g00323 1310 Gene3D - 1042 1302 IPR027417 -
Trre6g00323 1310 Gene3D - 692 881 IPR038718 -
Trre6g00323 1310 Gene3D - 519 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00323 Trre-Chr6 2276867 2282782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00323 707 1273 RAD5 or RAD16-like Gene Family AT5G22750 26.524 1.31e-45 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre6g00323 SNF2_N 4.6e-99 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00323 - - gmx:100803102 2057.72