Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00308 ATGAGTATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCATCCCCTTCCCTTCACCATCATCATCAACAACAAAATCAAAATCAAAATCAAAACCAACCCATTTCACATGATCACAATTCAAACCACTCTTTACCTTCATCAGCTTCATTAAGTGTTGGTTTTGGTATTTTTCCACTCTTAACAGCCACACCCTGCATGCCACAACAACAACCTCAAAACAATGATGTTCAAGAAAATCCTAACCAAAACAACAATTTTTGGAACCTTAGGATGTGTCCTGAACCAATGAATCTCCCAAAAAAAGGAGTTATCAATGTTGATGATGAAAACCACAATCATAATAGCAAGATGGTTTTGATGGAGAGTGAAGAAAATGGTGTTTATGGTTCTGAGTATAGAGTTTGTCATGATTGTGGTAATAGAGCTAAGAAAGATTGTGTTTTTAGAAGATGTAGGACTTGTTGTAAGGGGAGAGGTTATGATTGTAATACTCATTTGAAGAGTACTTGGATTCCTTCGACTCGTCGTCGCGAACGTGAGGTGGAGATGATTGGTGGCGGCGGTGGTGGTGGTGGTGATGGTGAGGGTTGTTCTGGTGTTAAGAGAGCAAAAACTTTATTAGGGTCATCACAAAATGCTACTGCTACTTCTCATAGTTCAAACTCTAATGGTACTACTCCAAAAAGTTTTGCTACTAGCTCTTGTCATCAAGATGCTAGTTTCAAAGAGGCATTACCAGGTCATGTTAATGCACCTGCTGTATTCAGATGCCATAGAGTAACTGCTATTGGCAATGGTGAAGATGAATTTGCTTACTTGGCAACAGTCCATATTTGTGGTCATGTTTTCAAAGGGTTTCTCTATGATCATGGTGTTGATGGAAAAAATCCAATGCCTTGTGTTTCTGAACTTCAATTAGGAAGTGGAAAGAATGGTGAATGTTCTTCTGCAATTGGTGTTACAACAAATAATGCTTACCCTGCTTCTGCTAGCTAG 999 0.3914 MSMLGLRDLVLIAPSPSLHHHHQQQNQNQNQNQPISHDHNSNHSLPSSASLSVGFGIFPLLTATPCMPQQQPQNNDVQENPNQNNNFWNLRMCPEPMNLPKKGVINVDDENHNHNSKMVLMESEENGVYGSEYRVCHDCGNRAKKDCVFRRCRTCCKGRGYDCNTHLKSTWIPSTRRREREVEMIGGGGGGGGDGEGCSGVKRAKTLLGSSQNATATSHSSNSNGTTPKSFATSSCHQDASFKEALPGHVNAPAVFRCHRVTAIGNGEDEFAYLATVHICGHVFKGFLYDHGVDGKNPMPCVSELQLGSGKNGECSSAIGVTTNNAYPASAS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00308 332 NCBIfam LRP1 C-terminal domain 246 293 IPR006511 -
Trre6g00308 332 NCBIfam putative zinc finger domain, LRP1 type 135 177 IPR006510 -
Trre6g00308 332 MobiDBLite consensus disorder prediction 209 230 - -
Trre6g00308 332 MobiDBLite consensus disorder prediction 18 48 - -
Trre6g00308 332 MobiDBLite consensus disorder prediction 66 85 - -
Trre6g00308 332 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 21 321 IPR007818 GO:0003700|GO:0006355
Trre6g00308 332 Pfam Domain of unknown function (DUF702) 134 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00308 Trre-Chr6 2177701 2179333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00308 1 312 C2H2 Transcription Factor Family AT5G12330 42.089 2.79e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre6g00308 DUF702 5.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00308 - - gmx:100806835 416.387