Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00294 ATGAAGGAAAACAAAGATCAACAAAACCCTCCAACATCACAAGAATCACCAAGAAAATTACAAAACATTAATATTATAGGAAGTGGAAGTACTACAAATGAGAGACTAAAAAGAGATGAATGGAGTGAAGGAGCAGTAACAACACTTCTTGAAGCATATGAATCAAAATGGATACTTAGAAACAGAGCAAAACTCAAAGGACAAGATTGGGAAGATGTTGCAAAATATGTTTCATCAAGATCAAATTCAACTAAGTCACCAAAGACACAAACACAGTGTAAGAATAAGATTGAGTCTATGAAGAAAAGGTATAGATCAGAATCAGCTAGTTCAGATGTTTCAGCTTGGCCTTTGTATTCAAGACTTGATCTTCTTCTTCGTGGGACAGGACAATTATCTACTACAACAGTAGTAGCTTCTCAATTGCAACATGTAAGTAATAATAATCATCATGGTTTGGTTTTGTTGGAACCTTCACTTGTTGTGTCACAACAAGGACAAGAAGAAGCTCATAAGCCACTAGCTCCTACTAGTGTTGTACATCCACCACCTACAACTGCTCAAAATTCACATGGATCAAATGGGGTTGATAAATTAGCCAAGGAAGATGAGTTAGAAACTAAGTCGTCGGACCATATAGCTAACAAGAATCTAGTGGATACGGATAGTAGCACGCCCGCGCTTTACAGCGAAAAAGACGAGCAAAGATCGAAAAAGAGGAGAATGAGAACAGAGAACATTAACAACAAGAGACAAAAGAAAGAAGCAATGGGAATAGCAGAAAGCATAAGGTGGCTAGCAGAAGTAGTTGTTAGATCAGAACAAACAAGAATGGAGACATTGAAAGAGATTGAGAAGATGAGAGTTGAAGCTGAAGCAAAGAGAGGGGAAATGGAAATCAAGAGAACTGAAATTCTTGCTAATACACAACTTGAGATTGCTAGGATATTTGCAAATGTTAATAATAAAGATGTTGATTCATCATTGAGAATTGGAAGAAGTTAA 1005 0.3662 MKENKDQQNPPTSQESPRKLQNINIIGSGSTTNERLKRDEWSEGAVTTLLEAYESKWILRNRAKLKGQDWEDVAKYVSSRSNSTKSPKTQTQCKNKIESMKKRYRSESASSDVSAWPLYSRLDLLLRGTGQLSTTTVVASQLQHVSNNNHHGLVLLEPSLVVSQQGQEEAHKPLAPTSVVHPPPTTAQNSHGSNGVDKLAKEDELETKSSDHIANKNLVDTDSSTPALYSEKDEQRSKKRRMRTENINNKRQKKEAMGIAESIRWLAEVVVRSEQTRMETLKEIEKMRVEAEAKRGEMEIKRTEILANTQLEIARIFANVNNKDVDSSLRIGRS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00294 334 MobiDBLite consensus disorder prediction 7 32 - -
Trre6g00294 334 Gene3D - 41 106 - -
Trre6g00294 334 MobiDBLite consensus disorder prediction 196 215 - -
Trre6g00294 334 MobiDBLite consensus disorder prediction 1 36 - -
Trre6g00294 334 MobiDBLite consensus disorder prediction 227 254 - -
Trre6g00294 334 MobiDBLite consensus disorder prediction 164 254 - -
Trre6g00294 334 Coils Coil 281 301 - -
Trre6g00294 334 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 14 320 IPR044823 -
Trre6g00294 334 FunFam Trihelix transcription factor ASIL2 41 106 - -
Trre6g00294 334 Pfam Myb/SANT-like DNA-binding domain 38 124 IPR044822 -
Trre6g00294 334 MobiDBLite consensus disorder prediction 181 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00294 Trre-Chr6 2111708 2113242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00294 28 136 Trihelix Transcription Factor Family AT3G14180 36.283 1.34e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre6g00294 Myb_DNA-bind_4 9.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00294 - - adu:107471869 402.905