Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00291 ATGCCTTGGTCACGCTCAATTCAAAACGAGAGGCCATTTGTATGTAGCCTTGAAGATTGTAAGGCGAGTTACAGAAGAAAGGATCATCTAAATCGCCACCTTCTACAGCATCAAGGGAAAACTTTTCAATGTCCTATTGAGAATTGCAAAAGTGGCTTCTCATTGCAAAGCAATATGAAAAGACATGTCGAAGAGATTCATGATGAACATTCATCCCCCTTTAGAAGTGGTGAAAATCAGAAGCAGTTTGTTTGTCCTGAAGTCGGTTGTGGAAAGGTTTTCAGATATGCATCACAGCTACAAAAACATGAAGATTCTCATGTTAAGCTCGATACAGTTGAAGTGGTGTGCTTAGAGCCTGGTTGCATGAAATATTTCACCAATGCAGAGTGCCTTAAAGCTCATGTTAAGTCTTGCCATCATTATGTGACCTGCGACACTTGTGGGACTAAGCAACTGAAGAAGAACATGAAGAGACATCTCCGCACACATGAAGCAAGCACTTCATCAGAACCCTTTAAATGTGAATTTAAGGGTTGTGACTGTACATTCTCAACTAAATCTAATCTTCATACGCATGAGAAAGCAGTGCACTTTCAAGTAAAGCCTTTTGTGTGCGGCTTTCCTAACTGTGGAATGAGGTTTGCTTACAAACACGTGAGAGATAATCATGAGAAGACCGCAAAACATGTTTTTACCCTTGGTGATTTTGAAGAAACTGATGAACAATTCAGGTCAAGGCCAAGGGGAGGGGTGAAGAGAAAATTTCCTACAGTAGAAATGTTGGTTAGGAAGAGAGTTACTCCACCTAGTCAATTGGAGAACTTGTTATTTATGCAGAATTGTGAGCAAGATGGATCGTACTCCACTCTAGTTTAA 879 0.4039 MPWSRSIQNERPFVCSLEDCKASYRRKDHLNRHLLQHQGKTFQCPIENCKSGFSLQSNMKRHVEEIHDEHSSPFRSGENQKQFVCPEVGCGKVFRYASQLQKHEDSHVKLDTVEVVCLEPGCMKYFTNAECLKAHVKSCHHYVTCDTCGTKQLKKNMKRHLRTHEASTSSEPFKCEFKGCDCTFSTKSNLHTHEKAVHFQVKPFVCGFPNCGMRFAYKHVRDNHEKTAKHVFTLGDFEETDEQFRSRPRGGVKRKFPTVEMLVRKRVTPPSQLENLLFMQNCEQDGSYSTLV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00291 292 ProSitePatterns Zinc finger C2H2 type domain signature. 206 230 IPR013087 -
Trre6g00291 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 112 IPR013087 -
Trre6g00291 292 ProSitePatterns Zinc finger C2H2 type domain signature. 175 198 IPR013087 -
Trre6g00291 292 Gene3D Classic Zinc Finger 69 140 - -
Trre6g00291 292 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Trre6g00291 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 203 IPR013087 -
Trre6g00291 292 Gene3D Classic Zinc Finger 4 39 - -
Trre6g00291 292 ProSitePatterns Zinc finger C2H2 type domain signature. 85 107 IPR013087 -
Trre6g00291 292 SUPERFAMILY beta-beta-alpha zinc fingers 154 212 IPR036236 -
Trre6g00291 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 72 IPR013087 -
Trre6g00291 292 SMART c2h2final6 204 230 IPR013087 -
Trre6g00291 292 SMART c2h2final6 173 198 IPR013087 -
Trre6g00291 292 SMART c2h2final6 143 164 IPR013087 -
Trre6g00291 292 SMART c2h2final6 83 107 IPR013087 -
Trre6g00291 292 SMART c2h2final6 115 140 IPR013087 -
Trre6g00291 292 SMART c2h2final6 13 37 IPR013087 -
Trre6g00291 292 SMART c2h2final6 42 67 IPR013087 -
Trre6g00291 292 SUPERFAMILY beta-beta-alpha zinc fingers 8 39 IPR036236 -
Trre6g00291 292 SUPERFAMILY beta-beta-alpha zinc fingers 40 68 IPR036236 -
Trre6g00291 292 SUPERFAMILY beta-beta-alpha zinc fingers 79 108 IPR036236 -
Trre6g00291 292 Gene3D Classic Zinc Finger 141 230 - -
Trre6g00291 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Trre6g00291 292 Pfam Zinc finger, C2H2 type 13 37 IPR013087 -
Trre6g00291 292 Pfam Zinc finger, C2H2 type 83 107 IPR013087 -
Trre6g00291 292 PANTHER ZINC FINGER PROTEIN 6 275 - -
Trre6g00291 292 ProSitePatterns Zinc finger C2H2 type domain signature. 44 67 IPR013087 -
Trre6g00291 292 Gene3D Classic Zinc Finger 40 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00291 Trre-Chr6 2077543 2078847 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00291 10 233 C2H2 Transcription Factor Family AT1G72050 51.636 2.49e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g00291 zf-C2H2 0.0013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00291 K09191 - gmx:100801812 462.225