Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00289 ATGGAAGAAGCTTTCCAAAGTGATGAAATACCAAAATTCAGAGATATCAGACGCTATTACTGCCCATACTGCGGTATCTGTAGATCCAAAAAAACCCTAATTAACTCACATGTCAATTCACAACACAAGGAGGAGGTGGAGAAAGCAAAAGCTGAATCTGAACCTGATTCAGAGAGTGCTTTGAAATCTAATACTTGTGAGGAATGCGGTGCTAGTTTTAAAAAACATGCTTATCTGTTGCAGCATATGCAAAGTCATTCACTTGAGAGGCCATTTGTATGTGGCCTTGAAGATTGTAAGGCGAGCTATAGAAGAAGGGATCATCTAAATCGTCACCTTCTACAGCATCAAGGGAAAACTTTTCAATGTCCTATTGAGAATTGCAAAAGTGGCTTCTCATTGCAAAGCAATTTGAAAAGACATGTTGAAGAGATTCATGATGAAAATTCGACCCCTATTAGAAGTGGTGAAAATCAGAAGCAGTTTGTTTGTCCTGAAATTGGCTGCGGAAAGGTTTTCAAATATGCATCACAGCTACAAAAGCATGAAGATTCTCATGTTAAGTTGGATACGGTTGAAGTGGTGTGCTTAGAGCCTGGTTGCATGAAATATTTCACCAATGCAGAGTGCCTTAAAGCTCATGTTAAGTCTTGCCATCATTATGTGACCTGCGACACTTGTGGGACTAAGCAACTGAAGAAGAACATGAAGAGGCATCTTCGCACACACGAAACCAGCACTTCATCAGAACCCTTTAAATGTGAATTTAAGGGTTGTGACTGCACATTCTCAACCAAATCGAATCTTCATACTCATGAGAAGGCAGTCCACTTTCAAGTAAAGCCTTTTGTGTGTGGGTTTCCTAATTGTGGAATGAAGTTTGCTTACAAACATGTGAGAGATAATCATGAAAAGACTGCAAAACATGTTTTTACCCTTGGTGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGTCAAGGCCAAGGGGAGGGGTGAAGAGAAAATATCCCACAGTAGAAATGTTGGTTAGGAAGAGAGTTACTCCACCTAGTCAATTGGAGAACTTGTTATTTATGCAGAATTGTGAGCAAGATGGATCGTACTCCACTCTAGGATAA 1122 0.3984 MEEAFQSDEIPKFRDIRRYYCPYCGICRSKKTLINSHVNSQHKEEVEKAKAESEPDSESALKSNTCEECGASFKKHAYLLQHMQSHSLERPFVCGLEDCKASYRRRDHLNRHLLQHQGKTFQCPIENCKSGFSLQSNLKRHVEEIHDENSTPIRSGENQKQFVCPEIGCGKVFKYASQLQKHEDSHVKLDTVEVVCLEPGCMKYFTNAECLKAHVKSCHHYVTCDTCGTKQLKKNMKRHLRTHETSTSSEPFKCEFKGCDCTFSTKSNLHTHEKAVHFQVKPFVCGFPNCGMKFAYKHVRDNHEKTAKHVFTLGDFEEADEQFRSRSRPRGGVKRKYPTVEMLVRKRVTPPSQLENLLFMQNCEQDGSYSTLG 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00289 373 Gene3D Classic Zinc Finger 119 147 - -
Trre6g00289 373 MobiDBLite consensus disorder prediction 38 57 - -
Trre6g00289 373 ProSitePatterns Zinc finger C2H2 type domain signature. 164 186 IPR013087 -
Trre6g00289 373 Gene3D Classic Zinc Finger 148 222 - -
Trre6g00289 373 ProSitePatterns Zinc finger C2H2 type domain signature. 285 309 IPR013087 -
Trre6g00289 373 SUPERFAMILY beta-beta-alpha zinc fingers 158 188 IPR036236 -
Trre6g00289 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 121 IPR013087 -
Trre6g00289 373 Pfam Zinc finger, C2H2 type 162 186 IPR013087 -
Trre6g00289 373 Pfam Zinc finger, C2H2 type 92 116 IPR013087 -
Trre6g00289 373 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Trre6g00289 373 SUPERFAMILY beta-beta-alpha zinc fingers 102 147 IPR036236 -
Trre6g00289 373 ProSitePatterns Zinc finger C2H2 type domain signature. 123 146 IPR013087 -
Trre6g00289 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 191 IPR013087 -
Trre6g00289 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 282 IPR013087 -
Trre6g00289 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Trre6g00289 373 MobiDBLite consensus disorder prediction 38 59 - -
Trre6g00289 373 SUPERFAMILY beta-beta-alpha zinc fingers 63 116 IPR036236 -
Trre6g00289 373 SMART c2h2final6 64 86 IPR013087 -
Trre6g00289 373 SMART c2h2final6 252 277 IPR013087 -
Trre6g00289 373 SMART c2h2final6 222 243 IPR013087 -
Trre6g00289 373 SMART c2h2final6 283 309 IPR013087 -
Trre6g00289 373 SMART c2h2final6 19 42 IPR013087 -
Trre6g00289 373 SMART c2h2final6 121 146 IPR013087 -
Trre6g00289 373 SMART c2h2final6 92 116 IPR013087 -
Trre6g00289 373 SMART c2h2final6 194 219 IPR013087 -
Trre6g00289 373 SMART c2h2final6 162 186 IPR013087 -
Trre6g00289 373 ProSitePatterns Zinc finger C2H2 type domain signature. 254 277 IPR013087 -
Trre6g00289 373 ProSitePatterns Zinc finger C2H2 type domain signature. 94 116 IPR013087 -
Trre6g00289 373 SUPERFAMILY beta-beta-alpha zinc fingers 233 287 IPR036236 -
Trre6g00289 373 Gene3D Classic Zinc Finger 225 281 - -
Trre6g00289 373 Gene3D Classic Zinc Finger 9 91 - -
Trre6g00289 373 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Trre6g00289 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 151 IPR013087 -
Trre6g00289 373 PANTHER ZINC FINGER PROTEIN 10 356 - -
Trre6g00289 373 Gene3D Classic Zinc Finger 92 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00289 Trre-Chr6 2062425 2064750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00289 88 312 C2H2 Transcription Factor Family AT1G72050 51.812 9.12e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g00289 zf-C2H2 0.0018 CL0361