Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00286 ATGAAAATCCCTTGTTGTTCGGTGTGCCAAACGCGGTACAACGAAGAAGAACGAGTTCCTCTTCTTCTTCAATGCGGCCATGGCTTCTGCAGAGAGTGTCTTTCTAGAATGTTCTCAGCTTCATCAGACGCTACTCTCACCTGTCCACGTTGTCGTCACGTCTCAACCGTCGGGAATTCGGTTTTAGCTTTACGGAAGAATTATGCGGTGCTTTCGTTAATTCATTCCGCCGTGGAAGCTTCTGCCGCCGGTGGCGGCAACCGAGGTTCGAATTTCGAATGTGATTTCACTGACGATGATGAAGACGGTGATGGTGAAGATGACGACGAGGATGACGAGGAGAAACGGCGGAGGAATAGCCGTGGCTCGCAGACTTCGAGTTCTGGTGGTTGTGCTCCGGTGATTGAGGTCGGTGTGCATCAGGATTTGAAATTAGTGAAGCGGATTGCGGAAGGAAGGAGAGCTGGTGTTGATATGTGGACGGCGGTGATCGGAGGTGGACGGTGTCGGCATCATGTGGCGGTGAAGAAAGCGGTGATAACTGAGGGAATGGATTTGGATTGGATGTTAGTGAAATTGGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGGAATGTTTGTACTTTTCACGGTGCGATGAAGGTTGATGAGAGCTTGTGTCTTGTGATGGATAAATGTTATGGATCGGTTCGCTCTGAGATGCAGCGTAATGAAGGAAGACTCACATTGGAGCAAGTTTTAAGATATGGAGCAGACATTGCACGAGGGGTTGTTGAGCTTCACGCTGCCGGCGTTGTTTGCATGAATTTAAAGCCTTCAAATCTACTTCTTGATGCAAATGGTCATGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCTCGACCTGAGTGTGACTCCACAAAGATCCATTCCTGTATGGAATGTATAATGCTTAGCCCACATTATACAGCACCAGAGGCTTGGGAACCTGTGAAGAAGTCATTAAATTTGTTCTGGGATGATGGAATAGGTATATCTCCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGAGCCATTCCTTGGGCTGGTTTAAGTGCAGAGGAAATCTATCGAGCAGTTGTCAAGGCAAAGAAGCAGCCTCCACAATATGCTAGTGTGGTTGGTGGAGGAATTCCAAGGGAACTGTGGAAGATGATTGGAGAGTGCTTACAATTCAAACCATCTAAAAGGCCTACCTTCAATGCAATGCTGGCAATATTTCTCCGTCATTTGCAAGAAATACCACGCAGCCCTCCTGCAAGCCCTGATAATGACCTTGTTAAGGGATCTGTATCAAATGTGACAGAGGCTTCCCCAGTACCTGAATTAGAAGTCCATCAGGACCCAAATCATCTTCATCGACTTGTGTCTGAAGGGGATGTCACTGGTGTTAGAGACTTTCTGGCAAAGGCTGCAACAGAAAATGAAAGCAACTACATGTCTTCTCTGTTGGAAGCTCAAAATGCTGATGGACAAACGGCTCTCCACTTGGCTTGTAGACGTGGCAGTGCAGAACTTGTTGAGACAATTCTGGAGTATGAAGAGGCTAATGTTGATGTCTTGGACAAAGATGGGGATCCTCCTCTTGTTTTTGCCTTAGCAGCTGGGTCCCATGAATGTGTGCGTAGCCTTATCAAAAGAAATGCTAGTGTGAAGTCACGATTGAGAGATGGGCTTGGCCCATCAGTAGCCCATGTTTGTGCTTATCATGGTCAGCCAGATTGTATGCGAGAGTTGCTTTTAGCTGGAGCTGATCCCAATGCCGTGGATGATGAAGGTGAATCAGTACTGCATAGGGCAATTGCCAAGAAGTTCACAGACTGTGCTATTGTGATAGTGGAAAATGGAGGCTGTAGATCGATGACCATCTTGAATTCAAAAAATCTGACACCACTGCACTTGTGTGTAGGGATGTGGAATGTTTCTGTTGTGAAGAGATGGGTGGAAGTTGCAACTTCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCTCTCGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAAAGTGAGGGGAGAGAGTTGGTGCGGATATTGCTTACAGCAGGAGCTGATCCATCTGCTCAAGATTCACAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGACAAATGATGTGGAATTGGTTCAGGTTATTCTTGCTGCTGGTGTTGATGTGAACACTCGCAATGTGCACAATAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGTTGGACTGCTTCTAGCTGCTGGAGCGGATTATAATTTGCAGGATGATGATGGTGATAATGCTTTCCATATAGCAGCAGAAACAGCAAAAATGATACGCGAAAATCTGGACTGGCTTATTGTTATGCTAAAGAATCCCGATGCTGATATTGAAGTCAGAAACCACAGTGGAAAGACACTACGGGACATCTTAGAGGCTCTACCCCGAGAATGGATATCCGAAGATCTGATGGAGGCACTCTCAAATAGAGGCGTTCATTTATCTCCTACAATATTTGAAGTGGGAGATTGGGTGAAGTTTAAAAGAACTGTCACAACTCCAACACATGGGTGGCAAGGTGCTAGACCAAAGAGTGTTGGCTTTGTGCAAAGTATTCCAGACCGGGATAATCTAATTGTTTCATTTTGTTCGGGAGAGGTTCATGTTCTGCCACATGAAGTTGTAAAAGTTGTTCCATTGGACAGGGGGCAACATGTACAACTGAAAGGAGATGTAAAAGAGCCTAGGTTTGGTTGGCGCGGGCAGTCACGTGACAGCATTGGGACAGTATTATGTGTTGACGATGATGGAATTCTCCGTGTTGGGTTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGTGTTGAGGAATTCAAGGTTGGAGATTGGGTTCGTATTCGTCCAACTCTTACATCTGCAAAACATGGATTAGGAGCTGTTACACCAGGAAGCATTGGCATTGTATATTGTATCCGACCTGACAGTAGCCTGTTAATTGAACTGAGCTATCTTCCAAATCCTTGGCATTGTGAACCAGAGGAGGTTGAGCATGTTCCTCCTTTCAGGATTGGTGATAAGGTATGTGTGAAGCGATCTGTCGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGTGAGATTGAGAACGATGGTCTCTTAGTAATAGAAATACCAAATCGACCCATACCATGGCAAGCTGATCCATCTGATATGGAGAAGGTGGAAGATTTTAAGGTTGGAGATTGGGTCAGAGTAAAAGCTTCAGTATCTTCTCCAAAATATGGATGGGAGGATATTACAAGGAACAGTATTGGGGTAATTCATAGCTTGGAGGAGGATGGTGATGTGGGAGTTGCCTTTTGCTTCAGAAGCAAGCCTTTTTCTTGCTCAGTCACTGATGTGGAGAAAGTTCCTCCTTTTGAGGTGGGACAAGAAATTCATGTGATGCAATCTGTTAGTCAGCCACGGCTTGGGTGGTCAAATGAATCACCAGCTACTGTTGGAAAAATAGTGAGAATTGACATGGATGGTGCCCTCAATGCAAAGGTCACCGGTAGGCAGACCTTGTGGAAAGTATCTCCTGGAGATGCCGAACGACTTCCAGGGTTTGAGGTTGGGGATTGGGTACGCTCTAAACCAAGCCTTGGAAATAGACCTAGTTACGACTGGAATAGTGTTGGGAGAGAGAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGTTATTTGGAGTTGGGTTGCTGTTTCCGTAAAGGGAAGTGGATCACTCATTATACGGATGTTGAAAAGGTTCCTAGCTTGAAAGTTGGGCAGTATGTTAGGTTCCGAGTTGGTTTGGTTGAACCCAGGTGGGGTTGGAGAGGAGCTCAGATTGAATCTCAAGGTATTATAACAAGTATTCATGCGGATGGAGAAGTCAGGGTTGCATTCTTTGGTTTGCCCGGACTGTGGAAAGGCGATCCTTCAGACCTGCAGGCAGAACAAATCTTTGAAGTGGGAGAGTGGGTGAGATTGAAAGAAAATGCAAATAATTGGAAATCAATTGTGCCAGGTAGTGTTGGCGTCGTTCAAGGGATAGGGTATGAAGGAGATGAAACTGACAGAAGTACTTATGTTGGCTTTTGTGGGGAGCAAGAGAAATGGGTAGGACCAAGTTCCCATCTTGAAAGAGCTGACAAACTCTTTGCAGGACAGAAAGTTAGAGTTAAACAATATGTAAAACAACCTAGATTTGGGTGGTCGGGGCACACGCATGCTAGTATTGGTACTATACAAGCAATTGATGCTGATGGAAAGCTTCGAATATACACCCCAGCGGGCTCAAAAACATGGATGCTGGACCCATCAGAAGTGGAGGTCGTGGAAGAGAAGGAGCTTTGTATTGGAGACTGGGTAAGGGTTAGAGCATCAGTTTCAACTCCAACCCACCATTGGGGGGAAGTGAGTCATTCAAGCGTTGGGGTTGTGCATCGGATGGAAGATGATAATTTATGGGTTTCATTCTGTTTTGTGGAGAGATTATGGCTTTGCAAGGCAAGTGAAATGGAACGGGTTAGGCCTTATAAAGTAGGGGACAAAGTAAGGATCAGAGATGGACTGGTATCGCCGCGGTGGGGATGGGGGATGGAAACACATGCCAGCAGGGGACAGGTTGTAGGAGTAGATGCAAATGGTAAACTAAGAATAAGGTTCCGTTGGAGGGAAGGTAGGCCTTGGATAGGAGACCCTGCTGATATTGCCCTTGATGAGAACTGA 4878 0.4604 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCRECLSRMFSASSDATLTCPRCRHVSTVGNSVLALRKNYAVLSLIHSAVEASAAGGGNRGSNFECDFTDDDEDGDGEDDDEDDEEKRRRNSRGSQTSSSGGCAPVIEVGVHQDLKLVKRIAEGRRAGVDMWTAVIGGGRCRHHVAVKKAVITEGMDLDWMLVKLEDLRRASMWCRNVCTFHGAMKVDESLCLVMDKCYGSVRSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSTKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISPESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRAVVKAKKQPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFNAMLAIFLRHLQEIPRSPPASPDNDLVKGSVSNVTEASPVPELEVHQDPNHLHRLVSEGDVTGVRDFLAKAATENESNYMSSLLEAQNADGQTALHLACRRGSAELVETILEYEEANVDVLDKDGDPPLVFALAAGSHECVRSLIKRNASVKSRLRDGLGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAIAKKFTDCAIVIVENGGCRSMTILNSKNLTPLHLCVGMWNVSVVKRWVEVATSDEIAEAIDIPSPLGTALCMAAASKKDHESEGRELVRILLTAGADPSAQDSQNGRTALHTAAMTNDVELVQVILAAGVDVNTRNVHNSIPLHLALARGAKACVGLLLAAGADYNLQDDDGDNAFHIAAETAKMIRENLDWLIVMLKNPDADIEVRNHSGKTLRDILEALPREWISEDLMEALSNRGVHLSPTIFEVGDWVKFKRTVTTPTHGWQGARPKSVGFVQSIPDRDNLIVSFCSGEVHVLPHEVVKVVPLDRGQHVQLKGDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGAVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVPPFRIGDKVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLVIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHSLEEDGDVGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVMQSVSQPRLGWSNESPATVGKIVRIDMDGALNAKVTGRQTLWKVSPGDAERLPGFEVGDWVRSKPSLGNRPSYDWNSVGRESLAVVHSVQDSGYLELGCCFRKGKWITHYTDVEKVPSLKVGQYVRFRVGLVEPRWGWRGAQIESQGIITSIHADGEVRVAFFGLPGLWKGDPSDLQAEQIFEVGEWVRLKENANNWKSIVPGSVGVVQGIGYEGDETDRSTYVGFCGEQEKWVGPSSHLERADKLFAGQKVRVKQYVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKTWMLDPSEVEVVEEKELCIGDWVRVRASVSTPTHHWGEVSHSSVGVVHRMEDDNLWVSFCFVERLWLCKASEMERVRPYKVGDKVRIRDGLVSPRWGWGMETHASRGQVVGVDANGKLRIRFRWREGRPWIGDPADIALDEN 1625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00286 1625 FunFam E3 ubiquitin-protein ligase KEG 726 859 - -
Trre6g00286 1625 FunFam E3 ubiquitin-protein ligase KEG 227 443 - -
Trre6g00286 1625 SUPERFAMILY Ankyrin repeat 507 804 IPR036770 -
Trre6g00286 1625 Gene3D - 766 846 IPR036770 -
Trre6g00286 1625 MobiDBLite consensus disorder prediction 95 111 - -
Trre6g00286 1625 Pfam RING-type zinc-finger 6 49 IPR027370 -
Trre6g00286 1625 Gene3D Transferase(Phosphotransferase) domain 1 226 456 - -
Trre6g00286 1625 MobiDBLite consensus disorder prediction 94 132 - -
Trre6g00286 1625 Pfam Ankyrin repeats (3 copies) 706 791 IPR002110 GO:0005515
Trre6g00286 1625 Pfam Ankyrin repeats (3 copies) 493 574 IPR002110 GO:0005515
Trre6g00286 1625 Pfam Protein kinase domain 172 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00286 1625 SMART ANK_2a 581 610 IPR002110 GO:0005515
Trre6g00286 1625 SMART ANK_2a 546 575 IPR002110 GO:0005515
Trre6g00286 1625 SMART ANK_2a 687 722 IPR002110 GO:0005515
Trre6g00286 1625 SMART ANK_2a 727 756 IPR002110 GO:0005515
Trre6g00286 1625 SMART ANK_2a 760 789 IPR002110 GO:0005515
Trre6g00286 1625 SMART ANK_2a 614 645 IPR002110 GO:0005515
Trre6g00286 1625 SMART ANK_2a 512 542 IPR002110 GO:0005515
Trre6g00286 1625 SMART ANK_2a 793 828 IPR002110 GO:0005515
Trre6g00286 1625 SUPERFAMILY Protein kinase-like (PK-like) 140 448 IPR011009 -
Trre6g00286 1625 Pfam Ankyrin repeats (many copies) 584 632 IPR002110 GO:0005515
Trre6g00286 1625 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Trre6g00286 1625 ProSiteProfiles Ankyrin repeat region circular profile. 727 758 - -
Trre6g00286 1625 ProSiteProfiles Ankyrin repeat profile. 512 545 IPR002110 GO:0005515
Trre6g00286 1625 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 1624 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Trre6g00286 1625 Pfam Mind bomb SH3 repeat domain 992 1112 IPR040847 -
Trre6g00286 1625 Pfam Mind bomb SH3 repeat domain 1244 1365 IPR040847 -
Trre6g00286 1625 Pfam Mind bomb SH3 repeat domain 1371 1492 IPR040847 -
Trre6g00286 1625 Pfam Mind bomb SH3 repeat domain 1118 1236 IPR040847 -
Trre6g00286 1625 Pfam Mind bomb SH3 repeat domain 1501 1619 IPR040847 -
Trre6g00286 1625 Pfam Mind bomb SH3 repeat domain 868 986 IPR040847 -
Trre6g00286 1625 CDD RING-HC_KEG-like 3 59 - -
Trre6g00286 1625 ProSiteProfiles Ankyrin repeat region circular profile. 760 792 - -
Trre6g00286 1625 ProSiteProfiles Ankyrin repeat region circular profile. 512 534 - -
Trre6g00286 1625 Gene3D - 581 640 IPR036770 -
Trre6g00286 1625 ProSiteProfiles Ankyrin repeat profile. 581 613 IPR002110 GO:0005515
Trre6g00286 1625 PRINTS Ankyrin repeat signature 513 528 IPR002110 GO:0005515
Trre6g00286 1625 PRINTS Ankyrin repeat signature 709 723 IPR002110 GO:0005515
Trre6g00286 1625 SMART ring_2 6 51 IPR001841 -
Trre6g00286 1625 Gene3D - 641 765 IPR036770 -
Trre6g00286 1625 Gene3D - 463 580 IPR036770 -
Trre6g00286 1625 ProSiteProfiles Ankyrin repeat profile. 727 759 IPR002110 GO:0005515
Trre6g00286 1625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Trre6g00286 1625 ProSiteProfiles Ankyrin repeat profile. 546 578 IPR002110 GO:0005515
Trre6g00286 1625 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Trre6g00286 1625 FunFam E3 ubiquitin-protein ligase KEG 453 682 - -
Trre6g00286 1625 SUPERFAMILY RING/U-box 4 76 - -
Trre6g00286 1625 ProSiteProfiles Protein kinase domain profile. 143 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00286 1625 ProSiteProfiles Ankyrin repeat profile. 760 792 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00286 Trre-Chr6 2048590 2060388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00286 205 426 MAP Kinase Kinase Kinase AT2G31800 29.646 1.26e-16 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Trre6g00286 Pkinase 8.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00286 K16279 - gmx:100777576 2972.57